View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_34 (Length: 270)
Name: NF7768_low_34
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_34 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 2927949 - 2927679
Alignment:
| Q |
1 |
attttatgtttacaggttttcttagtacccatccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctata |
100 |
Q |
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| T |
2927949 |
attttatgtttacaggttttcttagtacccattcatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctata |
2927850 |
T |
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| Q |
101 |
taatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccag-tttggtatggttgtattatgatctttatgggactt |
199 |
Q |
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| T |
2927849 |
taatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccagttttggtatggttgtattatgatctttatgggactt |
2927750 |
T |
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| Q |
200 |
gattgttagacttgtgttttcaaataagcgacgctttatgttagaatatccgagaaatatctgataatatg |
270 |
Q |
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| T |
2927749 |
gattgttagacttgtgttttcaaataagcgacgctttatgttagaaaatccgagaaatatctgataatatg |
2927679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 2311321 - 2311591
Alignment:
| Q |
1 |
attttatgtttacaggttttcttagtacccatccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311321 |
attttatgtttacaggttttcttagtacccatccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctata |
2311420 |
T |
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| Q |
101 |
taatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccag-tttggtatggttgtattatgatctttatgggactt |
199 |
Q |
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| T |
2311421 |
taatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacgttcaccagttttggtatggttgtattatgatctttatgggactt |
2311520 |
T |
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| Q |
200 |
gattgttagacttgtgttttcaaataagcgacgctttatgttagaatatccgagaaatatctgataatatg |
270 |
Q |
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| T |
2311521 |
gattgttagacttgtgttttaaaataagcgacgctttatgttagaaaatccgagaaatatctgataatatg |
2311591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 10173632 - 10173517
Alignment:
| Q |
29 |
ccatccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggtt |
128 |
Q |
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| T |
10173632 |
ccatccatcaagtaaagaaagagcgaaagcagtggctcgacctgagataatgcaggaagctcttattttgtataaagatgcaagaggcaggcgtggggtt |
10173533 |
T |
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| Q |
129 |
aactgatttcattctt |
144 |
Q |
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| T |
10173532 |
gaatgatttcattctt |
10173517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 29088783 - 29088671
Alignment:
| Q |
37 |
caggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatt |
136 |
Q |
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|||||||| |||||| |||||| ||| || ||||||||||||||||||||||||| | | ||||||||||||||| |||| ||| | || | ||||| |
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| T |
29088783 |
caggaagagaaagagtcaaagcgttgcttcggcctaagataatggaagaagctcttactttgtataatgatgcaagaacaagacgtgggattgaatgatt |
29088684 |
T |
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| Q |
137 |
tcattctttagga |
149 |
Q |
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| T |
29088683 |
tcattctttagga |
29088671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 1237847 - 1237727
Alignment:
| Q |
29 |
ccatccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggtt |
128 |
Q |
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|||||||||||| ||| ||||||||||||| |||||| ||| |||||||| | ||||||||| || ||||||||||| |||| |||| ||| |||| |
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| T |
1237847 |
ccatccatcaggtagagaaagagccaaagcggtggctcgaccagagataatgaaggaagctcttcttttatataatgattatagaggaaggcgtggggtt |
1237748 |
T |
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| Q |
129 |
aactgatttcattctttagga |
149 |
Q |
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| T |
1237747 |
gaatgatttcattcttcagga |
1237727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 8083223 - 8083175
Alignment:
| Q |
99 |
tataatgatgcaagagcaaggagtgaggttaactgatttcattctttag |
147 |
Q |
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| T |
8083223 |
tataatgatgtaagagcgaggcgtgaggttgaatgatttcattctttag |
8083175 |
T |
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