View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_low_4 (Length: 580)

Name: NF7768_low_4
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_low_4
NF7768_low_4
[»] chr5 (7 HSPs)
chr5 (218-564)||(43389915-43390247)
chr5 (18-134)||(43390328-43390444)
chr5 (37-95)||(11010257-11010315)
chr5 (37-80)||(14116522-14116565)
chr5 (47-98)||(18988776-18988827)
chr5 (48-98)||(31759028-31759078)
chr5 (37-95)||(42877257-42877315)
[»] chr8 (5 HSPs)
chr8 (37-92)||(10565358-10565413)
chr8 (35-92)||(44042548-44042605)
chr8 (37-92)||(41106036-41106091)
chr8 (37-95)||(37564367-37564425)
chr8 (38-95)||(39691149-39691206)
[»] chr4 (6 HSPs)
chr4 (37-93)||(29577964-29578020)
chr4 (19-90)||(33266860-33266931)
chr4 (48-90)||(50343876-50343918)
chr4 (37-82)||(4850643-4850688)
chr4 (25-78)||(38682658-38682711)
chr4 (31-80)||(49011933-49011982)
[»] chr3 (5 HSPs)
chr3 (37-92)||(36494188-36494244)
chr3 (37-92)||(29212713-29212768)
chr3 (36-95)||(29484871-29484930)
chr3 (37-95)||(53040482-53040540)
chr3 (37-98)||(51039768-51039829)
[»] chr6 (2 HSPs)
chr6 (39-98)||(5678503-5678562)
chr6 (36-92)||(32254180-32254236)
[»] chr2 (3 HSPs)
chr2 (25-80)||(11252738-11252793)
chr2 (37-92)||(33962981-33963036)
chr2 (37-95)||(11580456-11580514)
[»] chr1 (2 HSPs)
chr1 (37-84)||(9500918-9500965)
chr1 (37-98)||(6983022-6983083)
[»] scaffold0172 (1 HSPs)
scaffold0172 (36-78)||(13477-13519)
[»] chr7 (2 HSPs)
chr7 (37-83)||(24557747-24557793)
chr7 (37-97)||(9031709-9031769)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 218 - 564
Target Start/End: Complemental strand, 43390247 - 43389915
Alignment:
Q  218 gaaaatagtttgttttagttataatagtgatccatccaatggtgtatgtggcaaatcaaaagtaaaatttagttaattgagaataatattttgtggacca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43390247 gaaaatagtttgttttagttataatagtgatccatccaatggtgtatgtggcaaatcaaaagtaaaatttagttaattgagaataatattttgtggacca 43390148  T
Q  318 gttggaagttgcttgcaaggttccttgggatttcctccttgaccttgtcctcgagttccaaattcccctcatatcttaatcctaaaaaatatagattaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||    
T  43390147 gttggaagttgcttgcaaggttccttgggatttcctccttgaccttgtcctcgagttccaaattcccctcatatcttaatcct--------------aaa 43390062  T
Q  418 ataataaagaaaattagtctcaagagcagtggaacatgtctgatcaacaggaaaccaaattaaactaaacttgattattattattatgccggcaatcagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43390061 ataataaagaaaattagtctcaagagcagtggaacatgtctgatcaacaggaaaccaaattaaactaaacttgattattattattatgccggcaatcagt 43389962  T
Q  518 gttaccggatctgcttaagtaataatgctcgtacaaatacaaataca 564  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  43389961 gttaacggatctgcttaagtaataatgctcgtacaaatacaaataca 43389915  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 43390444 - 43390328
Alignment:
Q  18 atactccttaaaaatttataattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaatacataatcagaatttcatgtattgc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||    
T  43390444 atactccttaaaaatttataattaagaaactattcattagaaaagtctaatactttaattttcaatgtattgaatacatagtcataatttcatgcattgc 43390345  T
Q  118 aatactactctcgtcga 134  Q
    |||||||||||||||||    
T  43390344 aatactactctcgtcga 43390328  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 11010257 - 11010315
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    ||||||||||||||||||| |||||||||||||||| |||||   ||| ||||||||||    
T  11010257 aattaagaaactattcattgaaaaagtctaatacttcaatttctgatgcattgaataca 11010315  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 14116522 - 14116565
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttc 80  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  14116522 aattaagaaactatttattaaaaaagtctaatgctctaattttc 14116565  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 18988776 - 18988827
Alignment:
Q  47 ctattcattaaaaaagtctaatactttaattttcaatgtattgaatacataa 98  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||    
T  18988776 ctattcatcaaaaaagtctaatacttaaatttccaatgcattgaatgcataa 18988827  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 31759078 - 31759028
Alignment:
Q  48 tattcattaaaaaagtctaatactttaattttcaatgtattgaatacataa 98  Q
    |||| ||||||||| || ||||||| ||||||||||||||| |||||||||    
T  31759078 tatttattaaaaaaatcaaatacttcaattttcaatgtattaaatacataa 31759028  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 42877257 - 42877315
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    |||| ||||| ||||||| |||||||| ||| | || ||||||||||||||||||||||    
T  42877257 aattgagaaattattcatgaaaaaagtttaaaatttcaattttcaatgtattgaataca 42877315  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 10565358 - 10565413
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  10565358 aattaagaaactattcattgaaaaagtctaatactttaatttttgatgtattgaat 10565413  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 44042548 - 44042605
Alignment:
Q  35 ataattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    ||||||||||||||||||||| |||||||  ||||||| ||||| ||||| |||||||    
T  44042548 ataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattgaat 44042605  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 41106091 - 41106036
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    |||||||||| || |||||||||||||| |||| || ||||||||||| |||||||    
T  41106091 aattaagaaattaatcattaaaaaagtcaaatagttcaattttcaatgcattgaat 41106036  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 37564425 - 37564367
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    |||||||||| ||||| ||||||||||| |||| || ||||| ||||||||| ||||||    
T  37564425 aattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtattaaataca 37564367  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 39691206 - 39691149
Alignment:
Q  38 attaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    ||||| ||| ||||| ||||||||||| |||| || ||||||||||| ||||||||||    
T  39691206 attaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaataca 39691149  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 29577964 - 29578020
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaata 93  Q
    |||||| ||| |||| |||||||||||| ||||||||||||| ||||||||||||||    
T  29577964 aattaaaaaattattaattaaaaaagtcaaatactttaatttacaatgtattgaata 29578020  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 33266931 - 33266860
Alignment:
Q  19 tactccttaaaaatttataattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattga 90  Q
    ||||| ||||| |||| |||| |||||| ||||| ||||||||||| || |||||||||| ||||| |||||    
T  33266931 tactctttaaagatttttaataaagaaattattctttaaaaaagtcaaaaactttaatttccaatggattga 33266860  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 50343918 - 50343876
Alignment:
Q  48 tattcattaaaaaagtctaatactttaattttcaatgtattga 90  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||    
T  50343918 tattctttaaaaaagtcaaatattttaattttcaatgtattga 50343876  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 4850643 - 4850688
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaa 82  Q
    |||||||||| ||||| ||||||||||  |||||||||||||||||    
T  4850643 aattaagaaattattccttaaaaaagtaaaatactttaattttcaa 4850688  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 38682658 - 38682711
Alignment:
Q  25 ttaaaaatttataattaagaaactattcattaaaaaagtctaatactttaattt 78  Q
    |||| ||||| ||||||||||| ||||||||||||| || |||||||| |||||    
T  38682658 ttaagaatttttaattaagaaaatattcattaaaaatgtgtaatacttcaattt 38682711  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 49011982 - 49011933
Alignment:
Q  31 atttataattaagaaactattcattaaaaaagtctaatactttaattttc 80  Q
    |||| |||| ||||| ||||||||||||||||| |||||||| |||||||    
T  49011982 atttttaatcaagaatctattcattaaaaaagtttaatacttcaattttc 49011933  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 36494188 - 36494244
Alignment:
Q  37 aattaagaaactattcatt-aaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    ||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||    
T  36494188 aattaagaaactattcattgaaaaaaatctaatacttcaatttccaatgtattgaat 36494244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 29212713 - 29212768
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    ||||||||||||||||||| |||||||||||| ||| |||||   |||||||||||    
T  29212713 aattaagaaactattcattgaaaaagtctaatgcttcaatttatgatgtattgaat 29212768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 29484930 - 29484871
Alignment:
Q  36 taattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    ||||||||||| ||||| |||||||| ||||| |||| ||||||||||  ||||||||||    
T  29484930 taattaagaaattattctttaaaaaaatctaacacttcaattttcaataaattgaataca 29484871  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 53040482 - 53040540
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    |||||||||| ||||  |||||||| || ||||||| ||||| ||||||||||||||||    
T  53040482 aattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattgaataca 53040540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 51039768 - 51039829
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaatacataa 98  Q
    |||||| ||| |||||  |||||||||| |||| || ||||||||||| |||||||||||||    
T  51039768 aattaaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataa 51039829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 5678562 - 5678503
Alignment:
Q  39 ttaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaatacataa 98  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||  |||||||| ||||    
T  5678562 ttaagaaattattcattaaaaaagtttaatacttcaattttcaatacattgaatatataa 5678503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 32254236 - 32254180
Alignment:
Q  36 taattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    |||||||||||||||||||||||||||| | || ||| ||||| |||| ||||||||    
T  32254236 taattaagaaactattcattaaaaaagtttcattcttcaatttccaatatattgaat 32254180  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 11252793 - 11252738
Alignment:
Q  25 ttaaaaatttataattaagaaactattcattaaaaaagtctaatactttaattttc 80  Q
    |||||||||||||||||||||||| || ||| |||||||||| ||||| |||||||    
T  11252793 ttaaaaatttataattaagaaacttttaattgaaaaagtctactacttcaattttc 11252738  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 33963036 - 33962981
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaat 92  Q
    |||||||||| ||||| |||||||||| ||| |||| ||||||||||| |||||||    
T  33963036 aattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaat 33962981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 11580514 - 11580456
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaataca 95  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||  ||| ||||||||||    
T  11580514 aattaaaaaattattcattaaataagtctaatacttcaatttttgatggattgaataca 11580456  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 9500965 - 9500918
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatg 84  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  9500965 aattaagaaactatttattgaaaaagtctaatacttcaattttcaatg 9500918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 6983083 - 6983022
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaatacataa 98  Q
    |||||||||| |||||||||||| |||| |||| || ||||||||||| |||| ||||||||    
T  6983083 aattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattggatacataa 6983022  T

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Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 13477 - 13519
Alignment:
Q  36 taattaagaaactattcattaaaaaagtctaatactttaattt 78  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  13477 taattaagaaactattcattgaaaaagtctaatacttcaattt 13519  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 24557747 - 24557793
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaat 83  Q
    |||||| ||| |||| |||||||||||||||||||| ||||||||||    
T  24557747 aattaaaaaattatttattaaaaaagtctaatacttcaattttcaat 24557793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 9031709 - 9031769
Alignment:
Q  37 aattaagaaactattcattaaaaaagtctaatactttaattttcaatgtattgaatacata 97  Q
    |||||| ||| |||||||| |||||||  ||||||| ||||||||||| ||| ||||||||    
T  9031709 aattaaaaaattattcatttaaaaagttgaatacttcaattttcaatgcattaaatacata 9031769  T

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