View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_42 (Length: 252)
Name: NF7768_low_42
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_42 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 7598900 - 7599122
Alignment:
| Q |
13 |
ggttttttagcaaccagctgaataaaaatatccagtannnnnnnaaaaaataaataagccaaatgcatcactagcttattatgttttgatccgagtagca |
112 |
Q |
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| T |
7598900 |
ggttttttagcaaccagctgattaaaaatatccagtatttttttaaaaaataaataagccaaatgcatcactagcttattatgttttgatccgagtagca |
7598999 |
T |
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| Q |
113 |
tagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgataaatttacacacttgattgcttggtcggt |
212 |
Q |
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| T |
7599000 |
tggggcacgtggaatcccgtgtgaatcagcgatgaccactttgcaaggctaaatactcattgatgaccgataaatttacacacttgattgcttggtcggt |
7599099 |
T |
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| Q |
213 |
gtaataactcctacatgtataat |
235 |
Q |
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| T |
7599100 |
gtaataactcctacatgtataat |
7599122 |
T |
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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 184555 - 184474
Alignment:
| Q |
103 |
ccgagtagcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
184 |
Q |
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| T |
184555 |
ccgagtagcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
184474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 492961 - 493042
Alignment:
| Q |
103 |
ccgagtagcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
184 |
Q |
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| T |
492961 |
ccgagtagcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
493042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 18190622 - 18190689
Alignment:
| Q |
103 |
ccgagtagcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactc |
170 |
Q |
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| T |
18190622 |
ccgagtagcatggggcacgtggaatcccgtgtgaatcagcaaggaccaccttgcaaggctaaatactc |
18190689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 34656229 - 34656310
Alignment:
| Q |
103 |
ccgagtagcatagggcacgtgaaatcccgtgtgaatcaacaatgaccactttgcaaggctaaatactcattgatgaccgata |
184 |
Q |
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| T |
34656229 |
ccgagtagcatggggcacgtggaatgccgtgtgaatcagcaaggaccaccttgcaaggctaaatactcctgggtgaccgata |
34656310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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