View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_45 (Length: 250)
Name: NF7768_low_45
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 8253078 - 8252959
Alignment:
| Q |
120 |
cctcatttcattttcaagtcccacctcatttattgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253078 |
cctcatttcattttcaagtcccacctcatttattgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttc |
8252979 |
T |
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| Q |
220 |
tgataatgctgaaaattcat |
239 |
Q |
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|||||||||||||||||||| |
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| T |
8252978 |
tgataatgctgaaaattcat |
8252959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 8350200 - 8350113
Alignment:
| Q |
152 |
ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350200 |
ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcat |
8350113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 8352944 - 8352848
Alignment:
| Q |
152 |
ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatctcactcga |
248 |
Q |
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| T |
8352944 |
ttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaatcga |
8352848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 8356543 - 8356420
Alignment:
| Q |
120 |
cctcatttcattttcaagtcccacctcatttattgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttc |
219 |
Q |
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|||||||||| ||||||||| || |||| ||| | ||||||||||||| | | ||||||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
8356543 |
cctcatttcaatttcaagtcacatctcaattaatcatggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttc |
8356444 |
T |
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| Q |
220 |
tgataatgctgaaaattcatctca |
243 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
8356443 |
tgattatgctcaaaattcatctca |
8356420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 8334214 - 8334123
Alignment:
| Q |
157 |
ggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatctcactcga |
248 |
Q |
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||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||| |||| |
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| T |
8334214 |
ggctttgatatcaccatacttcaattgttttggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattcttctcaatcga |
8334123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 8360716 - 8360593
Alignment:
| Q |
120 |
cctcatttcattttcaagtcccacctcatttattgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttc |
219 |
Q |
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||||| |||| ||||||||| || |||| ||| | ||||||||||||||| | ||||||||||| || |||| |||||||||| ||| ||||||||||| |
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| T |
8360716 |
cctcacttcaatttcaagtcacatctcaattaatcatggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttc |
8360617 |
T |
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| Q |
220 |
tgataatgctgaaaattcatctca |
243 |
Q |
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|||| ||| ||||||||||||||| |
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| T |
8360616 |
tgattatgttgaaaattcatctca |
8360593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 8260786 - 8260697
Alignment:
| Q |
152 |
ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatct |
241 |
Q |
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|||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| ||| |||||| |||||| |
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| T |
8260786 |
ttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgatgaaaaatcatct |
8260697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8253197 - 8253157
Alignment:
| Q |
1 |
gagtaaaagtaggcattgaccaaacacaacaagtaacccac |
41 |
Q |
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| T |
8253197 |
gagtaaaagtaggcattgaccaaacacaacaagtaacccac |
8253157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 8258676 - 8258590
Alignment:
| Q |
155 |
atggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatct |
241 |
Q |
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||||||||||||||||| | || | ||| ||||| | ||||||||||||||| ||||||||||||||| ||| |||||| |||||| |
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| T |
8258676 |
atggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgatgaaaaatcatct |
8258590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 8265749 - 8265663
Alignment:
| Q |
155 |
atggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatct |
241 |
Q |
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||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| ||| |||||| |||||| |
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| T |
8265749 |
atggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgatgaaaaatcatct |
8265663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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