View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7768_low_47 (Length: 243)
Name: NF7768_low_47
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8253214 - 8253399
Alignment:
| Q |
1 |
aggtatatatatttctcattaatagtaccgtcatttttggttagcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8253214 |
aggtatatatatttctcattaatagtaccgtcatttttggttagcctttcatgatgcaagtgctcctatatttatgctttgagtagctcattcaaaagct |
8253313 |
T |
|
| Q |
101 |
ggatttttcacgtgtctgcaaaaacacaaataatacatccccattcctttattttttgttgatatggaaagggtcatacttttgac |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8253314 |
ggatttttcacgtgtctgcaaaaactcaaataatacatccccattcctttattttttgttgatatggaaagggtcatacgtttgac |
8253399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 28288784 - 28288722
Alignment:
| Q |
54 |
atgcaagtgctc-ctatatttatgctttgagtagctcattcaaaagctggatttttcacgtgt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
28288784 |
atgcaagtgctcactatatttatgctctgagtcactcattcaaaagctaaatttttcacgtgt |
28288722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 35057439 - 35057403
Alignment:
| Q |
65 |
cctatatttatgctttgagtagctcattcaaaagctg |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35057439 |
cctatatttatgctttgagtgactcattcaaaagctg |
35057403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University