View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_low_51 (Length: 239)

Name: NF7768_low_51
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_low_51
NF7768_low_51
[»] chr5 (17 HSPs)
chr5 (17-239)||(10559397-10559619)
chr5 (22-239)||(19605360-19605577)
chr5 (70-237)||(10659627-10659794)
chr5 (47-237)||(10651721-10651911)
chr5 (77-229)||(10588008-10588160)
chr5 (92-239)||(9825550-9825702)
chr5 (46-230)||(9827477-9827661)
chr5 (46-230)||(9835846-9836030)
chr5 (68-229)||(10716516-10716677)
chr5 (49-229)||(10605261-10605441)
chr5 (136-237)||(10746630-10746731)
chr5 (70-230)||(7193514-7193674)
chr5 (140-229)||(10740037-10740126)
chr5 (136-229)||(11048269-11048362)
chr5 (82-229)||(10581504-10581651)
chr5 (136-229)||(10762448-10762541)
chr5 (164-229)||(10612219-10612284)
[»] chr6 (5 HSPs)
chr6 (46-239)||(12932757-12932950)
chr6 (46-229)||(12907678-12907861)
chr6 (69-229)||(12900058-12900218)
chr6 (69-229)||(12949121-12949281)
chr6 (69-229)||(12958566-12958726)
[»] scaffold0692 (1 HSPs)
scaffold0692 (70-229)||(7781-7940)
[»] chr2 (1 HSPs)
chr2 (69-230)||(17922958-17923119)
[»] chr1 (3 HSPs)
chr1 (157-225)||(39875541-39875609)
chr1 (157-225)||(39890618-39890686)
chr1 (157-225)||(39898673-39898741)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 10559619 - 10559397
Alignment:
Q  17 attaatgaaataagattcctcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaa 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559619 attaatgaaataagattcttcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaa 10559520  T
Q  117 atgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559519 atgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagct 10559420  T
Q  217 atacatgtcaccatgtgtggaaa 239  Q
    |||||||||||||||||||||||    
T  10559419 atacatgtcaccatgtgtggaaa 10559397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 19605360 - 19605577
Alignment:
Q  22 tgaaataagattcctcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaa 121  Q
    ||||||||||| ||  ||||||| ||| ||||||| |||||| ||  ||||||||||||||   ||||||||||||| |||||  |||| ||||||||||    
T  19605360 tgaaataagatgccgattgcttccatcatctattgttgcttcttcaactcttggtacaatacacgggtccaaaatcttcataatgttatcaggaaatgaa 19605459  T
Q  122 ttttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctataca 221  Q
     |||||||||||||| |||||||||||||||||  |||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  19605460 atttcaacatacaaacgcagattttgaccatctgtaaacatgtcatccgtcggtcttcttcccgtaagcatttccaatataagcatcccaaagctataca 19605559  T
Q  222 tgtcaccatgtgtggaaa 239  Q
    | ||||||||||||||||    
T  19605560 tatcaccatgtgtggaaa 19605577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 10659627 - 10659794
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    ||||||||||| |||||||||||||||||| | || |||||| ||||||||| |||||||| | | ||||||||||||||| |||  ||||||||||||     
T  10659627 tcttggtacaagatgtgggtccaaaatctgtaaaatattatttggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatcc 10659726  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtgga 237  Q
    |||||||||||||| |||| ||||||||| | ||||| ||| ||||||||||||||||||||||||||    
T  10659727 gttggtcttcttccggtaagcatttccaacagaagcaccccgaagctatacatgtcaccatgtgtgga 10659794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 10651721 - 10651911
Alignment:
Q  47 tcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagatttt 146  Q
    ||||||||| || |||| || | ||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || ||||| ||| ||||| |||||    
T  10651721 tcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaatttt 10651820  T
Q  147 gaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtgga 237  Q
    |||| |||  ||||||| |||| |||||||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||| ||||||    
T  10651821 gaccttcttcaaacattccatctgttggtcttcttccggtaagcatttccaacataagcaccccgaagctatacatgtcaccatatgtgga 10651911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 10588008 - 10588160
Alignment:
Q  77 acaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtc 176  Q
    |||| |||||||||||||||||| |||| |||||   |||||||| |||||||| ||| ||| |||||||||||||||  |||||||||||| || ||||    
T  10588008 acaagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatcttcaaacatttcatctgtgggtc 10588107  T
Q  177 ttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  10588108 ttcttccggtgatcatttccaacataagcatcccaaagctatacatgtcacca 10588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 9825702 - 9825550
Alignment:
Q  92 aaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagatttt-----gaccatctaaaaacatttcatcagttggtcttcttcctgt 186  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||     |||||||||  ||||||| |||  ||||||||||||  ||    
T  9825702 aaaatatgcataacataattaggaaatgaaatttcaacatacatatgcagattttaatttgaccatctatgaacatttaatctattggtcttcttctcgt 9825603  T
Q  187 aatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtggaaa 239  Q
    || ||||||||||||| | || ||||||||||||||||||||||  |||||||    
T  9825602 aagcatttccaatataggaattccaaagctatacatgtcaccataagtggaaa 9825550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 9827477 - 9827661
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||||||||||| || ||||||||||||| |||| ||| |||||||||   || ||||| ||  |||||| ||||| || ||  | | ||||||    
T  9827477 atcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatgaactttcagcaaacgtacgtagattt 9827576  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
    ||||||||   |||  ||||||| || ||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  9827577 tgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatacatgtcaccat 9827661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 9835846 - 9836030
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||||||||||| || ||||||||||||| |||| |||||||||||||   || ||||  ||  |||||| ||||| || ||  | | ||||||    
T  9835846 atcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatgaactttcagcaaacgtacgtagattt 9835945  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
    ||||||||   |||  ||||||| || ||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  9835946 tgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatacatgtcaccat 9836030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 10716516 - 10716677
Alignment:
Q  68 tctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcat 167  Q
    ||||||| ||||| |||||| ||||||||||  |||| ||| | ||||||||||  | ||||| |   |||||||||||||||||||  ||| | |||||    
T  10716516 tctcttgatacaagatgtggatccaaaatctttataagattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattcat 10716615  T
Q  168 cagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||| |||||||| || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  10716616 cagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcacca 10716677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 10605441 - 10605261
Alignment:
Q  49 ttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttga 148  Q
    |||||||||| ||||  | ||||||| |||||  ||||||||||||||||   ||| ||||| |||||||||| || ||||| |   |||||||||||||    
T  10605441 ttctattgctacttctacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaatgaagttgcaacaaagttatgcagattttga 10605342  T
Q  149 ccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||||||  ||| | ||||||||| ||||| || || ||||  |||||||| || || || |||||||||||||||||||||    
T  10605341 ccatcttgaaaaacttcatcagtgggtctcctaccagtaagtatttccaacatcaggattccaaagctatacatgtcacca 10605261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 10746630 - 10746731
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtg 235  Q
    |||||||||||||||||||  ||| | ||||||||| |||||||| || |||| ||||||||  ||||| || |||||||||||||| ||||||| ||||    
T  10746630 atgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtg 10746729  T
Q  236 ga 237  Q
    ||    
T  10746730 ga 10746731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 7193674 - 7193514
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    ||||||||||| || |||||||||||| || |||| ||||||||| || ||| |||||||| | | | | |||||||||||||    ||||||||||||     
T  7193674 tcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttcatct 7193575  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
       ||||| ||||| ||||  |||||||| | ||||||||| ||||||||||| |||||||    
T  7193574 accggtctccttccggtaagaatttccaacaaaagcatcccgaagctatacatatcaccat 7193514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 10740037 - 10740126
Alignment:
Q  140 agattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||  ||| | ||||||||| |||||||| || ||||  |||||||| ||||| || |||||||||||||||||||||    
T  10740037 agattttgaccatcttgaaaaacttcatcagtgggtcttctaccggtaagtatttccaacataaggattccaaagctatacatgtcacca 10740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 11048269 - 11048362
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||||||  ||| | |||||  || |||||||| || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  11048269 atgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcacca 11048362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 10581651 - 10581504
Alignment:
Q  82 atgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttctt 181  Q
    ||||||||||||||| | | ||| ||||  |||||||||  || ||||| |   |||||||||||||||||||  |||    | |||||| ||||||||     
T  10581651 atgtgggtccaaaattttcttaagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttcta 10581552  T
Q  182 cctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  10581551 ccggtaagcatttccaacataaggattccaaagctatacatgtcacca 10581504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 10762448 - 10762541
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||||||  ||| | ||||||||| |||||||| || ||||  |||| ||| ||||| |  |||||||||||||||||||||    
T  10762448 atgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattttcaacataaggactccaaagctatacatgtcacca 10762541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 10612284 - 10612219
Alignment:
Q  164 tcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||| |||||||| || |||| ||||||||| ||||| || |||||||||||||| ||||||    
T  10612284 tcatcagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatatcacca 10612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 12932950 - 12932757
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    ||||||||||||| |||| ||  ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   ||||||||||    
T  12932950 atcttctattgctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattt 12932851  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtggaaa 239  Q
    |||||||||  ||| | |||||| || |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||  ||||||||    
T  12932850 tgaccatcttcaaaaagttcatcggtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcaccacatgtggaaa 12932757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 12907861 - 12907678
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||| || |||| ||  ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   ||||||||||    
T  12907861 atcttctattcctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattt 12907762  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||  ||| | ||||||||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12907761 tgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12907678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12900218 - 12900058
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   |||||||||||||||||||  ||| | ||||||    
T  12900218 ctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12900119  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12900118 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12900058  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12949281 - 12949121
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |  | |||||| ||||||||| ||| |||| |   |||||||||||||||||||  ||| | ||||||    
T  12949281 ctcttggtaaaagatgtggatccaaaatctttacgaaattattgggaaatgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12949182  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12949181 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12949121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12958726 - 12958566
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||| ||||  || | ||||| |||||||||||||  |||| |   |||||||||||||||||||  ||| | ||||||    
T  12958726 ctcttggtaaaagatgtggatccaacatctttattagattatcaggaaatgaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12958627  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12958626 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12958566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 7940 - 7781
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    |||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   |||||||||||||||||||  ||| | |||||||    
T  7940 tcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatca 7841  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    || |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  7840 gtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 7781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 17922958 - 17923119
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |||| |||   |||||||||| ||  |||| |   ||| ||||||||||| |||  ||| | ||||||    
T  17922958 ctcttggtaaaagatgtggatccaaaatctttataagattgcaaggaaatgaaattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatc 17923057  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
     || ||||||||||| |||| ||||||||  ||||| || ||||||||||||||||||||||    
T  17923058 ggtgggtcttcttccggtaagcatttccagcataaggattccaaagctatacatgtcaccat 17923119  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39875541 - 39875609
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||||||||||||||| || || ||||| ||||| | ||| ||||||||||||||||||||    
T  39875541 aaacatttcatcagttggtcttctcccagtcatcatctccaaaagaagaatcccaaagctatacatgtc 39875609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39890618 - 39890686
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||| ||||||||||| || || ||||| ||||| | ||| ||||||||||||||||||||    
T  39890618 aaacatttcatcggttggtcttctcccagtcatcatctccaaaagaagaatcccaaagctatacatgtc 39890686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39898673 - 39898741
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||||||||||||||| || || | ||| ||||| | ||| ||||||||||| ||||||||    
T  39898673 aaacatttcatcagttggtcttctcccagttaacatctccaaaagaagaatcccaaagctgtacatgtc 39898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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