View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_56 (Length: 226)
Name: NF7768_low_56
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 10671327 - 10671103
Alignment:
| Q |
4 |
tagttagctcttaattttctttgaaactagtatatactgcacacacacattcaaattaaaaataagagttagtatcttatatcatcatcttttgatgcta |
103 |
Q |
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| T |
10671327 |
tagttagctcttaattttctttgaaactagtatatactgcacacacacattcaaattaaaaataagagttagtatcttatatcatcatcttttgatgcta |
10671228 |
T |
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| Q |
104 |
ttatttgagtgagtactta---nnnnnnnnnnnnnnnattattaaaaattaactcttgctactaacacattcaaatgttccctccaaacttgaaaaacaa |
200 |
Q |
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| T |
10671227 |
ttatttgagtgagtacttatttttttttttagtttttattattaaaaattaactcttgctactaacacattcaaatgttccctccaaacttgaaaaac-a |
10671129 |
T |
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| Q |
201 |
atttttgctacttactttggctgcaa |
226 |
Q |
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| T |
10671128 |
atttttgctacttactttggctgcaa |
10671103 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 34026035 - 34026078
Alignment:
| Q |
67 |
aagagttagtatcttatatcatcatcttttgatgctattatttg |
110 |
Q |
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| T |
34026035 |
aagagttagtatcttatttcatcatcttttgatgctattatttg |
34026078 |
T |
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