View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_6 (Length: 569)
Name: NF7768_low_6
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 20 - 553
Target Start/End: Complemental strand, 6567952 - 6567419
Alignment:
| Q |
20 |
cttctaactcattatcaacctgtgatgctgtgtacacccttaccttcataaaataaaaatatatatttgttccatcaattcaaccaaatgcattaattta |
119 |
Q |
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| T |
6567952 |
cttctaactcattatcaacttgtgatgctgtgtacacccttaccttcataaaataaaaatatatatttgttccatcaattcaaccaaatgcattaattta |
6567853 |
T |
|
| Q |
120 |
tgaattcatccatattaagaatgattagtaatgctaaatatgtaattggtcctggctggtagtgaaactaactcagtcattacattacaagttacaatac |
219 |
Q |
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| T |
6567852 |
tgaattcatccatattaagaatgattagtaatgctaaatatgtaattggtcctggctggtagtgaaactaactcagtcattacattacaagttacaatac |
6567753 |
T |
|
| Q |
220 |
atcttaagttttgaaactaactcaatcattacgttacaagttacaagtcagtttttaggtcatttctctagtgaaggtgagatttggattannnnnnncc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6567752 |
atcttaagttttgaaactaactcaatcattacgttacaagttacaagtcagtttttaggtcatttctctagtgaaggtgagatttggattatttttttcc |
6567653 |
T |
|
| Q |
320 |
aacacaattatccttagcacctaatctatcctagatatttcaattctcagcatcaaaccattacataacatcctgaaacaaattttcatatatactggtc |
419 |
Q |
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| T |
6567652 |
aacacaattatccttagcacctaatctatcctagatatttcaattctcagcatcaaaccattacataacatcctgaaacaaattttcatatatactggtc |
6567553 |
T |
|
| Q |
420 |
ataaggaaatcatatattgttagactagatgatcacttatgaagacattaaggaatatctgaaaacgaaaatagttagtgtccacacgatgctattttca |
519 |
Q |
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| T |
6567552 |
ataaggaaatcatatattgttagactagatgatcacttatgaagacattaaggaatatctgaaaacgaaaatagttagtgtccacacgatgctattttca |
6567453 |
T |
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| Q |
520 |
tctaaatagagaaacaaacataccacaggtgatg |
553 |
Q |
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| T |
6567452 |
tctaaattgagaaacaaacataccacaggtgatg |
6567419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 34257760 - 34257805
Alignment:
| Q |
20 |
cttctaactcattatcaacctgtgatgctgtgtacacccttacctt |
65 |
Q |
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| T |
34257760 |
cttctaactcattatcaacttgtgatgctgtatacacccttacctt |
34257805 |
T |
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