View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_7 (Length: 505)
Name: NF7768_low_7
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 11758339 - 11757869
Alignment:
| Q |
20 |
ctgagttatccgaataattcttcataatcgattgcgcgataacgcaattctcatcagcattacgatttctcgaaatttgagaaaattcagattccgatgc |
119 |
Q |
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| T |
11758339 |
ctgaattatccgaataattcttcataatcgattgcgcgataacgcaattctcatcagcattacgatttctcgaaatttgagaaaattcagattccgatgc |
11758240 |
T |
|
| Q |
120 |
tctgttaacggaaacaacatcgtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagca |
219 |
Q |
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| T |
11758239 |
tctgttaacggaaacaacatcgtttcgtgttatctccgacgagatattcaaattcaaattcaaattcgaatttccgttactcgattttgaattctcagca |
11758140 |
T |
|
| Q |
220 |
aaagtaagttccgatttcgtacaaacttctgaaacttcatcgttctcctttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaat |
319 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758139 |
aaagtaagttccgatttcgtacaaacttcagaaacttcatcgttctcttttccattttcaaacttcaaaatcaagtttctacgaactccagaactagaat |
11758040 |
T |
|
| Q |
320 |
ccacacacgaagtctccgaaacttcaacttcattctcactcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcgagttcgt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758039 |
ccacacacgaagtctccgaaacttcaacttcattctcattcctcttctcaaatctacgaacacattcaacaccactcgaaatttcacttctcgagttcgt |
11757940 |
T |
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| Q |
420 |
tcttcctttaacagcagagattctactcgaatcacacgaaacttcacctccggcgaaatccgaaccagaac |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11757939 |
tcttcctttaacagcagagattctactcgaatcacacgaaacttcacctccggcgaaatccgaaccagaac |
11757869 |
T |
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