View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_9 (Length: 441)
Name: NF7768_low_9
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 702741 - 703148
Alignment:
| Q |
18 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaa |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
702741 |
cttttactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcattagataattag |
702840 |
T |
|
| Q |
118 |
ataatatgttgtacttatatatgtatatatcattgttgtcaaacatgagatcgaacccgtgaaacttttgtatcatagtttaattggttcaacagattca |
217 |
Q |
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|||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
702841 |
ataatatgttctgcttatatatgtatatatcaatgttgtcaaacatgagatcgaacccgtgaaacttttgtatcatagtttaattggttcaacagattca |
702940 |
T |
|
| Q |
218 |
accaaacgagtaaaaataaataaagaagtgttaaaaaagtatacataccaccattcctggtgtcattgatatccacacaaaagtcctgtaaagggctggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
702941 |
accaaacgagtaaaaataaataaagaagtgttaaaaaagtatacataccaccattcttggtgtcattgatagccacacaaaagtcctgtaaagggctggg |
703040 |
T |
|
| Q |
318 |
atcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttg |
417 |
Q |
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|||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
703041 |
atcaaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatg-tttttttggaacaattcaatttatgtattttg |
703139 |
T |
|
| Q |
418 |
cttgtatat |
426 |
Q |
| |
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||||||||| |
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| T |
703140 |
cttgtatat |
703148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 712697 - 712290
Alignment:
| Q |
18 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaa |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
712697 |
ctttcactgagaaaaaaaaatcatttggtgtagcaagctttggatccttgcaaaatttgccattcacaaaaactgcaaaacaaaatcattagataattaa |
712598 |
T |
|
| Q |
118 |
ataatatgttgtacttatatatgtatatatcattgttgtcaaacatgagatcgaacccgtgaaacttttgtatcatagtttaattggttcaacagattca |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
712597 |
ataatatgttctacttatatatgtatatatcaaagttgtcatacatgagatcaaacccgtgaaacttttgtatcatagtttaattggttcaacagattca |
712498 |
T |
|
| Q |
218 |
accaaacgagtaaaaataaataaagaagtgttaaaaaagtatacataccaccattcctggtgtcattgatatccacacaaaagtcctgtaaagggctggg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
712497 |
accaaacgagtaaaaataaataaagaagtgttaaaaaagtatacataccaccattcttggtgtcattgatagccacacaaaagtcctgtaaagggctggg |
712398 |
T |
|
| Q |
318 |
atcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttg |
417 |
Q |
| |
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|||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
712397 |
atcaaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatg-tttttttggaacaattcaatttatgtattttg |
712299 |
T |
|
| Q |
418 |
cttgtatat |
426 |
Q |
| |
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||||||||| |
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| T |
712298 |
cttgtatat |
712290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 711010 - 711352
Alignment:
| Q |
18 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaaatcattagataattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||| ||||||||| |||||||| | |||||||| |
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| T |
711010 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggattcttacagaatttgccgttcacaaacactgcaaaa-aaaatcatcatataattaa |
711108 |
T |
|
| Q |
118 |
ataatatgttgtacttatatatgtatatatcattgttgtcaaacatgagatcgaacccgtgaaacttttgtatcatagtttaattggttcaacagattca |
217 |
Q |
| |
|
|||||| |||||| |||||| | |||||| | |||||||||| ||||||||| | ||||||||||||| ||| |||| | ||| || | |
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| T |
711109 |
ataata---------cctatatggatatatgaatgttgttagacatgagatc--acccgtgaagttattgtatcatagttcaatcggtttatcaggttaa |
711197 |
T |
|
| Q |
218 |
accaaacgagt----aaaaataaataaagaagtgttaaaaaagtatacataccaccattcctggtgtcattgatatccacacaaaagtcctgtaaagggc |
313 |
Q |
| |
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||||| ||||| | ||||||||||| |||| || ||||||||||||||||||| | |||||||||||||| ||||||||||||| |||| ||||| |
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| T |
711198 |
accaaccgagtcaaaataaataaataaaaaagtatt-aaaaagtatacataccacccgttttggtgtcattgatagccacacaaaagtcttgtagagggc |
711296 |
T |
|
| Q |
314 |
tgggatcaaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaag |
369 |
Q |
| |
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| |||||||| ||||| ||||||| | | || |||| ||||||||| | ||||||| |
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| T |
711297 |
taggatcaaatgcaaaggcacaagatgccaatgctaggaaggctgtgaaaaacaag |
711352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 718043 - 718133
Alignment:
| Q |
18 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaaatcatta |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
718043 |
cttttactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcagactttgccattcacaaaaactgcaaaacaaattcatta |
718133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 718264 - 718385
Alignment:
| Q |
248 |
ttaaaaaagtatacataccaccattcctggtgtcattgatatccacacaaaagtcctgtaaagggctgggatcaaaggcaaatgcacaaggtactaaagc |
347 |
Q |
| |
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|||||| || |||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| | | |||| || |
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| T |
718264 |
ttaaaagagcatacataccaccattcttggtgtcattgatagccacacaaaagtcttgtagagggctgggatcaaaggcaaaggcacatgatgctaaggc |
718363 |
T |
|
| Q |
348 |
taagaaggctgtcacaaacaag |
369 |
Q |
| |
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||||||||||||||||||||| |
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| T |
718364 |
caagaaggctgtcacaaacaag |
718385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 722436 - 722384
Alignment:
| Q |
18 |
ctttcactgagaaaaagaaatcatttggtgtagcaagctttggatccttgcag |
70 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| |||| |||||||| |||||| |
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|
| T |
722436 |
cttttactgagaaaaagaaatcatctgctgtaacaagttttggatctttgcag |
722384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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