View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_high_10 (Length: 243)
Name: NF7769_high_10
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3165012 - 3164783
Alignment:
| Q |
1 |
agaaagtccagcatcacatttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3165012 |
agaaagtccagcatcacatttacctttgcagaaattggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatctgccggaagtttcact |
3164913 |
T |
|
| Q |
101 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcagg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3164912 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaacctactgagcagg |
3164813 |
T |
|
| Q |
201 |
ctaaagtttcgcaatcaaagcttgatgtcc |
230 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
3164812 |
ctaaagtttcgcaatcaaagcttgaagtcc |
3164783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3164736 - 3164512
Alignment:
| Q |
1 |
agaaagtccagcatcacatttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcact |
100 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || | |||||||||||| |
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| T |
3164736 |
agaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcact |
3164637 |
T |
|
| Q |
101 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcagg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |
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| T |
3164636 |
cacgaaacgaggacaaactggtctcctgaatcccaggttccagcagcatctgccgatgataatgagactaagcctgaagttttgcaatctactgagcagg |
3164537 |
T |
|
| Q |
201 |
ctaaagtttcgcaatcaaagcttga |
225 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
3164536 |
ctaaagttccgcaatcaaagcttga |
3164512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 3164432 - 3164231
Alignment:
| Q |
29 |
cagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctg |
128 |
Q |
| |
|
||||| ||||||||||||||||||| ||| || || |||||||||||||||||||| ||| |||||||||||| | ||||||| ||||| ||||||| || |
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| T |
3164432 |
cagaaattggagagagttaaatcttgcactaaagagacatcaaaggatggcctatctgccagaagtttcactcgcaaaacgaggacaaaatggtctcatg |
3164333 |
T |
|
| Q |
129 |
aatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgatgt |
228 |
Q |
| |
|
|||| ||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3164332 |
aatcacagattccagcggcatctgccgatgatagcgagactaagcctgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaggt |
3164233 |
T |
|
| Q |
229 |
cc |
230 |
Q |
| |
|
|| |
|
|
| T |
3164232 |
cc |
3164231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3164184 - 3163955
Alignment:
| Q |
1 |
agaaagtccagcatcacatttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcact |
100 |
Q |
| |
|
||||||||||| |||||||||||| | ||||| |||||||| |||||| |||||| || ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3164184 |
agaaagtccagtatcacatttaccatcccagaaattggagagcgttaaaacttccattaaagaaacatcaaaggatggcctatcttccggaagtttcaca |
3164085 |
T |
|
| Q |
101 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcagg |
200 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| |||||||| |||| || ||||| ||| ||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
3164084 |
cacgaaacgaggacaaattggtcccctgaaacccaggttccagctgcgtctgctgatgataacaagactaagcctgaagttttgcaatctactgagcagg |
3163985 |
T |
|
| Q |
201 |
ctaaagtttcgcaatcaaagcttgatgtcc |
230 |
Q |
| |
|
|||||||||| |||||||||||| |||| |
|
|
| T |
3163984 |
ataaagtttcgggatcaaagcttgaagtcc |
3163955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 22844256 - 22844092
Alignment:
| Q |
3 |
aaagtccagcatcacatttacctttgcagaatttggagagagttaaatcttcc--accaaggaaacatcaaaggatggcctatccgccggaagtttcact |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
22844256 |
aaagtccaacatcacatttaccttcgcaaaaattggagagagttaaaccttccccaccaaggaaacatcaaaggatggcctatctgccggaagttttact |
22844157 |
T |
|
| Q |
101 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagacta |
170 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
22844156 |
cacgaaacgaggataaactggtgtcctgaatcccaggt-----cgccatctgccgataataacgagacta |
22844092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3163908 - 3163700
Alignment:
| Q |
1 |
agaaagtccagcatcacatttacctttgcagaatttggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcact |
100 |
Q |
| |
|
||||||||||| |||||||||||| | ||||| ||| ||||||| |||||||| | || || ||||||||||| || |||| | ||| |||||||| |
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|
| T |
3163908 |
agaaagtccagtatcacatttaccatctcagaaattgatgagagttgaatcttccgctaaagagacatcaaaggaaggattatctgtcgggagtttcaca |
3163809 |
T |
|
| Q |
101 |
cacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcagg |
200 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||||||| |||| |||||| ||||| |||| || ||||||| |||||||| |||||||||||||||| |
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| T |
3163808 |
caagaaacaaggacaaactggtctcctgaatcccaggttccagctgcatcttccgatgataatgaaactaagcctgaagtttcacaatctactgagcagg |
3163709 |
T |
|
| Q |
201 |
ctaaagttt |
209 |
Q |
| |
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||||||||| |
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|
| T |
3163708 |
ctaaagttt |
3163700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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