View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_high_4 (Length: 424)
Name: NF7769_high_4
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 24310269 - 24309878
Alignment:
| Q |
17 |
gacatcaggagaaggatgggagaaaatgtgttacaaaattcaataggaaatttaatatggccagcattggtggtttatgataatgtcaacaaaaatacta |
116 |
Q |
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| T |
24310269 |
gacatcaggagaaggatgggagaaaatgtgttacaaaattcaataggaaatttaatatggccagcattggtggtttatgataatgtcaacaaaaatacta |
24310170 |
T |
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| Q |
117 |
atactggtgatatggttaaaattttggaagaagaaattggaaaagttaatgaggaattgtttctaaaagtgaaagatgatcctagatttttatggagtga |
216 |
Q |
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| T |
24310169 |
atactagtgatatggttaaaattttggaagaagaaattggaaatgttaatgaggaattgtttctaaaagtgaaagatgatcctagatttttatggagtga |
24310070 |
T |
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| Q |
217 |
tgagtgtgctgaattaatgcttgaaggaatggataaaaatccaatttcatttgtgttcacaagttggggaaatatgggattcaaagagattgattttggt |
316 |
Q |
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| T |
24310069 |
tgagtgtgctgaattaatgcttgaaggaatggataaaaattcaatttcatttgtgttcacaagttggggaaatatgagattcaaagagattgattttggt |
24309970 |
T |
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| Q |
317 |
ttggggaagcctttatggattgcacaaagaggtggtacaaaagaagctactccaaacacagttgtgttgatggaaacatatgagggaattga |
408 |
Q |
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| T |
24309969 |
tgggggaagcctttatggattgcacaaagaggtggtacaaaagaagctactccaaacacagttgtgttgatggaaacatatgagggaattga |
24309878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 24313265 - 24313656
Alignment:
| Q |
17 |
gacatcaggagaaggatgggagaaaatgtgttacaaaattcaataggaaatttaatatggccagcattggtggtttatgataatgtcaacaaaaatacta |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||| |
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| T |
24313265 |
gacatcaggagaaggatgggagagaatgtgttacaaaattcaataggaaatttaatatggcctgcaacggttgtttatgataatgtcaacaaaaacacta |
24313364 |
T |
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| Q |
117 |
atactggtgatatggttaaaattttggaagaagaaattggaaaagttaatgaggaattgtttctaaaagtgaaagatgatcctagatttttatggagtga |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
24313365 |
atactagtgatatggttaaaattttggaagaagaaattggaaatgttaatgaggaattgtttctaaaagtgaaaaacgatcctagttttttatggagtga |
24313464 |
T |
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| Q |
217 |
tgagtgtgctgaattaatgcttgaaggaatggataaaaatccaatttcatttgtgttcacaagttggggaaatatgggattcaaagagattgattttggt |
316 |
Q |
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| T |
24313465 |
cgtgcgtgctgaattaacgcttgaaaaagtgggtaaaaatccaattttatttgtgttcacaagttggggaaatatgggattcaaagagattgattttggt |
24313564 |
T |
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| Q |
317 |
ttggggaagcctttatggattgcacaaagaggtggtacaaaagaagctactccaaacacagttgtgttgatggaaacatatgagggaattga |
408 |
Q |
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| T |
24313565 |
tgggggaagcctttatggatcgcacaaagaggtgttacaaaagaagctattccaaaccaagttgtgttgatggaaacatatgagggaattga |
24313656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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