View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7769_high_5 (Length: 363)
Name: NF7769_high_5
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 45863769 - 45864119
Alignment:
| Q |
19 |
aacgtgtcacataatcacattcaattcattttctcaaattattacatatgtgtatcagtgtcatgtctgttgtctacgtccgtgctccgttagggagaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45863769 |
aacgtgtcacataatcacattcaattcattttctcaaattattacatatgtgtatcagtgtcatgtctgttgtctacgtccgtgctccgttagggagaag |
45863868 |
T |
|
| Q |
119 |
ggaaaacctgtccacgcaaaatgatcttcaagacactgccgtgtggaacacgctccgaagagtcaactgttaataagttgagtttgacgagaagcttgtt |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45863869 |
ggaaaacctgtccgcgcaaaatgatcttcaagacactgccgtgtggaacacgctccgaagagtcaactgttaacaagttgagtttgacgagaagcttgtt |
45863968 |
T |
|
| Q |
219 |
gaagccggtaacgggcttaaaatcaaa---------------------gtcattggcactaacagagtcttgtttaagagtagaatttgaagatgatgag |
297 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45863969 |
gaagccggtaacgggcttaaaatcaaagtcaccagtgggaaaatcattgtcattggcactaacagagtcttgtttaagagtagaatttgaagatgatgag |
45864068 |
T |
|
| Q |
298 |
taacaagaatagtgaaatttgaagggtttgggtttgggtttgagaatgcgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45864069 |
taacaagaatagtgaaatttgaagggtttgggtttgggtttgagaatgcgc |
45864119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 45883671 - 45883726
Alignment:
| Q |
119 |
ggaaaacctgtccacgcaaaatgatcttcaagacactgccgtgtggaacacgctcc |
174 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
45883671 |
ggaaaacctggcctcgcaaaatgattttcaagacgctgccgtgttgaacacgctcc |
45883726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University