View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7769_high_8 (Length: 315)

Name: NF7769_high_8
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7769_high_8
NF7769_high_8
[»] chr2 (40 HSPs)
chr2 (18-315)||(38792594-38792891)
chr2 (115-306)||(39136862-39137053)
chr2 (115-306)||(39415669-39415860)
chr2 (159-313)||(39222551-39222705)
chr2 (103-231)||(39390555-39390683)
chr2 (128-288)||(39390078-39390238)
chr2 (97-230)||(38792925-38793058)
chr2 (73-214)||(38792388-38792531)
chr2 (125-272)||(39415451-39415598)
chr2 (114-218)||(39221666-39221770)
chr2 (208-288)||(39221928-39222008)
chr2 (208-288)||(39222138-39222218)
chr2 (97-231)||(38793178-38793312)
chr2 (97-237)||(39389709-39389849)
chr2 (159-263)||(39603192-39603296)
chr2 (129-220)||(38792567-38792658)
chr2 (103-254)||(39451686-39451837)
chr2 (145-231)||(39390345-39390431)
chr2 (97-215)||(39415250-39415368)
chr2 (73-237)||(39473898-39474062)
chr2 (73-231)||(39136568-39136726)
chr2 (79-169)||(39422178-39422268)
chr2 (78-227)||(39152190-39152339)
chr2 (108-237)||(39222290-39222419)
chr2 (240-313)||(39389885-39389958)
chr2 (85-178)||(39415161-39415254)
chr2 (107-218)||(39192611-39192722)
chr2 (107-218)||(39198291-39198402)
chr2 (170-237)||(39602993-39603060)
chr2 (145-254)||(39137303-39137412)
chr2 (103-211)||(39451434-39451542)
chr2 (30-101)||(38792485-38792556)
chr2 (116-231)||(39192850-39192965)
chr2 (116-231)||(39198530-39198645)
chr2 (97-206)||(39391033-39391142)
chr2 (212-275)||(39192680-39192743)
chr2 (212-275)||(39198360-39198423)
chr2 (159-308)||(39451238-39451387)
chr2 (182-303)||(39222238-39222359)
chr2 (78-143)||(39458543-39458608)
[»] chr7 (2 HSPs)
chr7 (115-254)||(19807223-19807362)
chr7 (73-231)||(19806929-19807087)
[»] chr5 (3 HSPs)
chr5 (109-231)||(17059194-17059316)
chr5 (200-306)||(33560511-33560617)
chr5 (96-206)||(33560281-33560391)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 38792594 - 38792891
Alignment:
Q  18 acatcaaggccaggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttgtattgaaacagaagcttttt 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38792594 acatgaaggccaggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttgtattgaaacagaagcttttc 38792693  T
Q  118 gaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792694 gaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaagg 38792793  T
Q  218 agcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagtttgagtcaata 315  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38792794 accaggaatctaaacagaaattgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcaaaatgaaggagtttgagtcaata 38792891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 115 - 306
Target Start/End: Original strand, 39136862 - 39137053
Alignment:
Q  115 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 214  Q
    ||||| |||||||| ||||| |||||||| ||||| |||||  |||||||||||||||||||||| | |||||||||||||||||||||| | |||||||    
T  39136862 tttgagaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaagtga 39136961  T
Q  215 aggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagttt 306  Q
     ||||||| ||| |||| ||||  |||||||||  ||||| |||| ||| ||||||||||| ||||||||||||  | ||||||||||||||    
T  39136962 tggagcagcaatttaaaaagaaactgtttgaaatccaagtcaaggcgttagagtcaaaagaaaaccaacttgtagaccaaatgaaggagttt 39137053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 306
Target Start/End: Complemental strand, 39415860 - 39415669
Alignment:
Q  115 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 214  Q
    |||||||||||||| ||||| ||||| || ||||| |||||  |||||||||||||||| ||||| | |||||||||||||||||||||||| || ||||    
T  39415860 tttgaaaaccgaatcaaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtga 39415761  T
Q  215 aggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagttt 306  Q
    |||||| | |||||||| ||||| |||||||||  ||||| |||||||| |||||||||||  | ||||| |||  | ||||||||||||||    
T  39415760 aggagctgaaatctaaaaagaagctgtttgaaatccaagtcaaggagttagagtcaaaagaacagcaactcgtagaccaaatgaaggagttt 39415669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 159 - 313
Target Start/End: Original strand, 39222551 - 39222705
Alignment:
Q  159 tgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaag 258  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||  |||||||||||||| | |||||||| |||||  | ||||||| |||||||||    
T  39222551 tgaaggccgaatgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaagcaggttgaaagccaagttaag 39222650  T
Q  259 gagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagtttgagtcaa 313  Q
    ||||| ||||||||||||||||||||| || || |||| ||||||||||| ||||    
T  39222651 gagttagagtcaaaagataaccaacttatatgcaaaataaaggagtttgaatcaa 39222705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 39390683 - 39390555
Alignment:
Q  103 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 202  Q
    |||||||||| |||||||| || |||||||||  ||||||| ||||| |||||| ||||| |||| ||||||||||| ||||||||||||||||||||||    
T  39390683 aaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttg 39390584  T
Q  203 aaggtcaagtgaaggagcaggaatctaaa 231  Q
    |||| ||| ||||||| | ||||||||||    
T  39390583 aaggccaaatgaaggaactggaatctaaa 39390555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 288
Target Start/End: Complemental strand, 39390238 - 39390078
Alignment:
Q  128 tgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatc 227  Q
    |||||||  ||||||| ||||| |||||| ||||| |||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||| | ||||||    
T  39390238 tgaaggattttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatc 39390139  T
Q  228 taaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 288  Q
    |||| |||||  | | ||||| |||||||||||||| ||||| |||| |||| ||||||||    
T  39390138 taaaaagaagcaggtcgaaagccaagttaaggagttagagtctaaaggtaacgaacttgta 39390078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 38792925 - 38793058
Alignment:
Q  97 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 196  Q
    |||||||||||||||| ||| |||| || ||||||||| ||||||| |||||| || ||| |||||| |||| |||||||||| || |||||  || |||    
T  38792925 gtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcatgactcaaagaagcgag 38793024  T
Q  197 aatttgaaggtcaagtgaaggagcaggaatctaa 230  Q
    ||||||||||||||||||||||||  ||||||||    
T  38793025 aatttgaaggtcaagtgaaggagctagaatctaa 38793058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 38792388 - 38792531
Alignment:
Q  73 gtgacggagctggtgaatgattt--tgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggt 170  Q
    |||| ||||||||||||||||||  ||| |||| ||| ||||  ||||| | | ||||||||||||||||||  ||||| |||||  ||||||| |||||    
T  38792388 gtgaaggagctggtgaatgatttggtgtgttgagacaaaagcagtttgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggt 38792487  T
Q  171 gaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 214  Q
    ||||||||| |||||||||  |||||||||||||||||||||||    
T  38792488 gaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 38792531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 39415598 - 39415451
Alignment:
Q  125 gaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcagga 224  Q
    |||||||||| |||||| | ||||| |||||| ||||||| |  |||||||||   ||||||||||||||||||||| || | ||||||| ||||| |||    
T  39415598 gaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaaagccaagtgagggagctgga 39415499  T
Q  225 atctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaa 272  Q
    ||||||| |||||   |||||||| ||||| |||||||||||||||||    
T  39415498 atctaaaaagaagcaatttgaaagacaagtaaaggagttggagtcaaa 39415451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 39221666 - 39221770
Alignment:
Q  114 ttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtg 213  Q
    |||||||| ||  ||||||||  ||||||| ||||| |||||| |||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||    
T  39221666 ttttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaaggccaaatg 39221765  T
Q  214 aagga 218  Q
    |||||    
T  39221766 aagga 39221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 39221928 - 39222008
Alignment:
Q  208 caagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 288  Q
    ||||||||||||| |||||||||| ||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  39221928 caagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaacttgta 39222008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 39222138 - 39222218
Alignment:
Q  208 caagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 288  Q
    ||||||||||||| |||||||||| ||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  39222138 caagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaacttgta 39222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 38793178 - 38793312
Alignment:
Q  97 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 196  Q
    ||||||||| |||||  |||||||| ||| ||||||   |||||||  ||||| |||||| ||||||| |||||||||||||| |||| |||||  ||||    
T  38793178 gtattgaaaaagaagtgttttgaaagccggatgaagatgcttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaattaaaagctagag 38793277  T
Q  197 aatttgaaggtcaagtgaaggagcaggaatctaaa 231  Q
    ||||||||||| ||||| |||||| ||| ||||||    
T  38793278 aatttgaaggtaaagtggaggagctggagtctaaa 38793312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 39389849 - 39389709
Alignment:
Q  97 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 196  Q
    |||||||||||||||| || | ||| || ||||||||| |||||||| ||||  ||||||  ||||| ||   || ||||||| |||||||| ||||  |    
T  39389849 gtattgaaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcatgaatcaaaggagaagg 39389750  T
Q  197 aatttgaaggtcaagtgaaggagcaggaatctaaacagaag 237  Q
    ||||||||||||||| |||||||| |||||||||| |||||    
T  39389749 aatttgaaggtcaagcgaaggagctggaatctaaaaagaag 39389709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 39603192 - 39603296
Alignment:
Q  159 tgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaag 258  Q
    ||||||||| | ||||||||| ||||||||||||||||||||||||  ||||| |||||||| |||||||||| |||||   |||||||| |||||  ||    
T  39603192 tgaaggccgagcgaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtggag 39603291  T
Q  259 gagtt 263  Q
    |||||    
T  39603292 gagtt 39603296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 38792567 - 38792658
Alignment:
Q  129 gaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagc 220  Q
    |||||| |||||||||||||| |||||| ||||||||| |||| ||||||| ||||||||| ||||||||||| ||| ||| |||| |||||    
T  38792567 gaaggaacttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagc 38792658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 39451686 - 39451837
Alignment:
Q  103 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 202  Q
    |||||||| | || ||||| ||| ||| |||||||||| |  || || | |||| |||| |||||||||| |||||| |||||||||| |||||||||||    
T  39451686 aaacagaaacattatgaaagccggatggaggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttg 39451785  T
Q  203 aaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagt 254  Q
    ||||  |||||||||| | |||||||||| |||||   |||||||| |||||    
T  39451786 aaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaagccaagt 39451837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 39390431 - 39390345
Alignment:
Q  145 aaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 231  Q
    ||||| |||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||| ||| ||||||| | ||||||||||    
T  39390431 aaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaa 39390345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 39415368 - 39415250
Alignment:
Q  97 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 196  Q
    |||||||||||||||| ||| |||| || | |||| || ||||||||||||| ||||||| |||||| |||  |||||||||| ||||  || |||||||    
T  39415368 gtattgaaacagaagcatttagaaagccaagtgaaagagcttgagtcgaaagcaaagcaagatgaagtccgattgaaggagcatgaattgaacgagagag 39415269  T
Q  197 aatttgaaggtcaagtgaa 215  Q
    || || |||||||||||||    
T  39415268 aacttaaaggtcaagtgaa 39415250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 39474062 - 39473898
Alignment:
Q  73 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 172  Q
    |||| |||||| ||||||||||| ||||  |||||||||| |||||||| ||| ||| || | ||| |||| ||||| |||||   ||| ||||| |||     
T  39474062 gtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtgg 39473963  T
Q  173 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaag 237  Q
    |||||||  |||||||| |||||||||||||| | || ||||||| ||  ||||||||| |||||    
T  39473962 aggagcataaatcaaaacagagagaatttgaaagccaggtgaaggggctagaatctaaaaagaag 39473898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 39136568 - 39136726
Alignment:
Q  73 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 172  Q
    |||| |||||||||||||||||| ||||  |||||||||| ||| |||| ||  || ||||| |||||||||||||| | ||||  |||||||||  |||    
T  39136568 gtgaaggagctggtgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattga 39136667  T
Q  173 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 231  Q
    ||||||| ||||   |||| | |||||||||||| |   |||| |||| ||||||||||    
T  39136668 aggagcatgaattggaagaaaaagaatttgaaggccggatgaatgagctggaatctaaa 39136726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 39422268 - 39422178
Alignment:
Q  79 gagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccggg 169  Q
    ||||||| ||||||||| ||||  ||||||||||  ||||||| ||||||||||||||||||||| ||||| ||||||  ||| |||||||    
T  39422268 gagctggagaatgatttggtatcaaaacagaagcaatttgaaagccgaatgaaggaccttgagtctaaagagaagcaacttgatggccggg 39422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 39152190 - 39152339
Alignment:
Q  78 ggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggag 177  Q
    |||||||||||||||||| ||||  |||||||||| |||||||| ||| || ||||| |||||||| ||||| || |||  ||| || || ||||||| |    
T  39152190 ggagctggtgaatgatttggtatccaaacagaagcattttgaaagccggattaaggaacttgagtctaaagagaaacaacttgatggacgagtgaagggg 39152289  T
Q  178 cacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatc 227  Q
       ||||||||||||   ||||||||||| || |||||| ||| ||||||    
T  39152290 tttgaatcaaaagaggatgaatttgaaggccaggtgaagaagctggaatc 39152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 39222290 - 39222419
Alignment:
Q  108 gaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggt 207  Q
    ||||| ||| |||| || |||||||||  ||||||| ||||| ||||||  ||||||||  |||||||||||  ||||||||||||||| ||| |||||     
T  39222290 gaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggc 39222389  T
Q  208 caagtgaaggagcaggaatctaaacagaag 237  Q
    ||| ||||||| | |||||| ||| |||||    
T  39222390 caactgaaggaactggaatccaaaaagaag 39222419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 39389958 - 39389885
Alignment:
Q  240 gtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagtttgagtcaa 313  Q
    ||||||| | ||||| |||||||| |||||||||||||||||||||||| || |||||| ||||||||| ||||    
T  39389958 gtttgaaggccaagtgaaggagttagagtcaaaagataaccaacttgtaggcaaaatgatggagtttgaatcaa 39389885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 39415254 - 39415161
Alignment:
Q  85 gtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagc 178  Q
    ||||||||||| ||||  |||| ||| | |||||||| |||||||||||| |||||||| ||||| |||||| ||||||| || ||||||||||    
T  39415254 gtgaatgatttggtatcaaaactgaatcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 39192722 - 39192611
Alignment:
Q  107 agaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaagg 206  Q
    ||||||| ||||||  || | |||||||  ||||||| ||||| |||||  |||||| ||  ||||||||||  |||||||||||||||||||| |||||    
T  39192722 agaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaagg 39192623  T
Q  207 tcaagtgaagga 218  Q
     |||||||||||    
T  39192622 ccaagtgaagga 39192611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 39198402 - 39198291
Alignment:
Q  107 agaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaagg 206  Q
    ||||||| ||||||  || | |||||||  ||||||| ||||| |||||  |||||| ||  ||||||||||  |||||||||||||||||||| |||||    
T  39198402 agaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaagg 39198303  T
Q  207 tcaagtgaagga 218  Q
     |||||||||||    
T  39198302 ccaagtgaagga 39198291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 39602993 - 39603060
Alignment:
Q  170 tgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaag 237  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||||| ||||| |||||||||| |||||    
T  39602993 tgaaggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaag 39603060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 39137303 - 39137412
Alignment:
Q  145 aaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttg 244  Q
    ||||| || ||| ||||||||||||||| |||||| |||||||||| |||||||||||||| | || ||| ||| |  |||||||||  ||||  |||||    
T  39137303 aaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaagttaaaatgatggatctagaatctaaaatgaagcagtttg 39137402  T
Q  245 aaaggcaagt 254  Q
    |||| |||||    
T  39137403 aaagccaagt 39137412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 39451434 - 39451542
Alignment:
Q  103 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 202  Q
    |||||||| | || ||||| ||| ||| |||||||||| || || || ||||||  |||| ||||| |||||||||| ||||||||||| ||||| ||||    
T  39451434 aaacagaaacattatgaaagccggatggaggaccttgactcaaatgagaagcaacttgaaagccggttgaaggagcatgaatcaaaagaaagagagtttg 39451533  T
Q  203 aaggtcaag 211  Q
    |||| ||||    
T  39451534 aaggccaag 39451542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 38792485 - 38792556
Alignment:
Q  30 ggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttgtatt 101  Q
    |||| |||||||||||||||||| |||||||||| ||| ||| ||||  |||||||||| |||||| |||||    
T  38792485 ggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgactgatttggtatt 38792556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 39192965 - 39192850
Alignment:
Q  116 ttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaa 215  Q
    |||||| || ||||||||| |||||||| || || | |||| ||||||| ||||||||| ||   |||||||||||||  ||||| ||||| | |||| |    
T  39192965 ttgaaagccaaatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgca 39192866  T
Q  216 ggagcaggaatctaaa 231  Q
    ||||| ||||||||||    
T  39192865 ggagctggaatctaaa 39192850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 39198645 - 39198530
Alignment:
Q  116 ttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaa 215  Q
    |||||| || ||||||||| |||||||| || || | |||| ||||||| ||||||||| ||   |||||||||||||  ||||| ||||| | |||| |    
T  39198645 ttgaaagccaaatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgca 39198546  T
Q  216 ggagcaggaatctaaa 231  Q
    ||||| ||||||||||    
T  39198545 ggagctggaatctaaa 39198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 39391142 - 39391033
Alignment:
Q  97 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 196  Q
    |||||||| ||||||| || ||||| || ||||||||| |||||||| ||||| || |||  ||||||||   |||||||||| |||| ||| ||||  |    
T  39391142 gtattgaagcagaagcattgtgaaagccaaatgaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaaggagaagg 39391043  T
Q  197 aatttgaagg 206  Q
    ||||||||||    
T  39391042 aatttgaagg 39391033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 39192743 - 39192680
Alignment:
Q  212 tgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaaga 275  Q
    ||||||||| |||||||||| ||||| | |||||| | ||||| |||||||| |||||||||||    
T  39192743 tgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaaga 39192680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 39198423 - 39198360
Alignment:
Q  212 tgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaaga 275  Q
    ||||||||| |||||||||| ||||| | |||||| | ||||| |||||||| |||||||||||    
T  39198423 tgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaaga 39198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 308
Target Start/End: Original strand, 39451238 - 39451387
Alignment:
Q  159 tgaaggccgggtgaaggagcacgaatcaaaagagagagaat-ttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaa 257  Q
    ||||||||||  |||||||   |||||||||||| |||||  ||||||| ||| | ||||||| ||||| |||| || ||   |||||||| ||| | ||    
T  39451238 tgaaggccggaagaaggagtttgaatcaaaagag-gagaaagttgaaggccaaatcaaggagctggaatttaaaaaggagcactttgaaagccaattgaa 39451336  T
Q  258 ggagttggagtcaaaagataaccaacttgtacgcgaaatgaaggagtttga 308  Q
    || |||| |||||| ||| |||||||||||| || || |||||||||||||    
T  39451337 ggtgttgcagtcaatagaaaaccaacttgtaggccaagtgaaggagtttga 39451387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 39222238 - 39222359
Alignment:
Q  182 aatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataacca 281  Q
    ||||||||||||| ||||||||||| || | |||| ||| ||||||||||  ||||   || ||||| ||| | |||||||| ||||| ||||| || ||    
T  39222238 aatcaaaagagagggaatttgaaggccaggcgaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagca 39222337  T
Q  282 acttgtacgcgaaatgaaggag 303  Q
    ||||| | || || ||||||||    
T  39222338 acttgaaggccaagtgaaggag 39222359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 39458543 - 39458608
Alignment:
Q  78 ggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtc 143  Q
    |||||| |||||||||||  |||  |||||||||| ||| |||| |||||||||||| ||||||||    
T  39458543 ggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 39458608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 19807223 - 19807362
Alignment:
Q  115 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 214  Q
    |||||||||||||| ||||| |||||||| ||||| |||||  ||||||||||| |||||||||| | |||||||||||||||||||||| | ||| |||    
T  19807223 tttgaaaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaaagccaaatga 19807322  T
Q  215 aggagcaggaatctaaacagaagttgtttgaaaggcaagt 254  Q
     ||||||| |||||||| ||||| |||||||||| |||||    
T  19807323 tggagcagcaatctaaaaagaagctgtttgaaagccaagt 19807362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 19806929 - 19807087
Alignment:
Q  73 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 172  Q
    |||| ||||||| |||||||||| ||||  |||||||||| ||| |||| ||  || ||||| |||||||||||||| | ||||  |||||||||  |||    
T  19806929 gtgaaggagctgatgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattga 19807028  T
Q  173 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 231  Q
    ||||||| |||||| ||||   |||||||||||| | |||||| |||| ||||||||||    
T  19807029 aggagcatgaatcagaagaacaagaatttgaaggccgagtgaatgagctggaatctaaa 19807087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 17059194 - 17059316
Alignment:
Q  109 aagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtc 208  Q
    |||| ||| |||| |||||||||||| ||||  || ||||| || ||| ||||||  | ||||| ||||||| ||||||||||||| ||||||||||| |    
T  17059194 aagcatttcgaaagccgaatgaaggagcttgcatcaaaagagaaacaacatgaagcactggtgatggagcacaaatcaaaagagagtgaatttgaaggcc 17059293  T
Q  209 aagtgaaggagcaggaatctaaa 231  Q
     ||||||||||| ||||||||||    
T  17059294 tagtgaaggagctggaatctaaa 17059316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 33560511 - 33560617
Alignment:
Q  200 ttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatgaa 299  Q
    |||| ||||| |||||||||| |||||||||| ||||    |||||||| |||||||||||||| ||||||||||| |  ||||||||| || || ||||    
T  33560511 ttgatggtcaggtgaaggagctggaatctaaaaagaaccactttgaaagacaagttaaggagtttgagtcaaaagagagtcaacttgtaggccaactgaa 33560610  T
Q  300 ggagttt 306  Q
    |||||||    
T  33560611 ggagttt 33560617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 33560281 - 33560391
Alignment:
Q  96 tgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagaga 195  Q
    ||||||||||||| ||| ||  |||| || ||||||||| ||| |||| ||||| ||||||  |||||||||  |||| ||||| || ||||| ||||      
T  33560281 tgtattgaaacaggagcattgagaaagccaaatgaaggagcttcagtcaaaagagaagcaacttgaaggccgattgaatgagcatgagtcaaaggagaag 33560380  T
Q  196 gaatttgaagg 206  Q
    |||||||||||    
T  33560381 gaatttgaagg 33560391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University