View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_11 (Length: 475)
Name: NF7769_low_11
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 23907616 - 23907172
Alignment:
| Q |
7 |
ccatgctttaggaatgccgtcacgatagcatttcatataaagaacaaaccactatggcatgtttgttgaaaagaaaacatgtaattcaatgaagttaatt |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23907616 |
ccatgctttaggaatgccgtcatgatagcatttcatataaagaacaaaccactatggcgtgtttgttgaaaagaaaacatgtaattcaatgaagttaatt |
23907517 |
T |
|
| Q |
107 |
acatttagtaataaaatcttaacatattttatgtatttgagataaactcataggatattat-gagtgagaaacattatgtatgtttgtgtgtactaggtt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23907516 |
acatttagtaataaaatcttaacatattttatgtatttgagataaactcataggatattattgagtgagaaacattatgtatgtttgtgtgtactaggtt |
23907417 |
T |
|
| Q |
206 |
caaagtattctagccaatttgaaatttataaatcttattaccataatgagtctgattttgaggcatgtaacatatacacacagggtacatgtatatgaag |
305 |
Q |
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| T |
23907416 |
caaagtattctagccaatttgaaatttataaatcttattaccataatgaatctcattttgaagcatgtaacatatacacactgggtacatgtatatgaag |
23907317 |
T |
|
| Q |
306 |
tttttcattgacgtttgtttcttgttgaagtgtgagtaagtcataaccattgttgttaaaatcctcatcagaatcctaaaatcctacaattttgcgattt |
405 |
Q |
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||||||||| || ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
23907316 |
tttttcatttacatttgtttcttgttaaagtgtgagttagtcctaaccattgttgttaaaatcctcatcagaatcctaaaatccaatgattttgcgattt |
23907217 |
T |
|
| Q |
406 |
tgtgatgccttaccgatttgaatcctaaactatgcaaaatccgtt |
450 |
Q |
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| T |
23907216 |
tctgatgccttaccgatttgaaccgtaaactatgcaaaatccgtt |
23907172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 21957245 - 21957203
Alignment:
| Q |
76 |
aaagaaaacatgtaattcaatgaagttaattacatttagtaat |
118 |
Q |
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| T |
21957245 |
aaagaaaacatgtaattcaatgaagtgaattacagttagtaat |
21957203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 19449760 - 19449648
Alignment:
| Q |
351 |
accattgttgttaaaatcctcatcagaatcctaaaatcctacaattttgcgattttgtgatgccttaccgatttgaatcctaaactatgcaaaatccgtt |
450 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||| ||||| || |||||||||||||||||||||| ||| |
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| T |
19449760 |
accattgttgttaaaatcctgatcagaatcgttaaatcctacgcttttgcgattttgctttgcct----gagcagaatcctaaactatgcaaaatctgtt |
19449665 |
T |
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| Q |
451 |
cggaatcgtttatgttt |
467 |
Q |
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| |||| ||||||||| |
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| T |
19449664 |
tgaaatcatttatgttt |
19449648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 2793760 - 2793814
Alignment:
| Q |
354 |
attgttgttaaaatcctcatcagaatcctaaaatcctacaattttgcgattttgt |
408 |
Q |
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| T |
2793760 |
attgttgttaaaatcctgatcagaatcgttaaatcctacagttttgcgactttgt |
2793814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 2793843 - 2793893
Alignment:
| Q |
425 |
gaatcctaaactatgcaaaatccgttcggaatcgtttatgtttaagcgatt |
475 |
Q |
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||||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
2793843 |
gaatcctaaactatgcaaagtctgttcaaaatcgtttatgtttaagcgatt |
2793893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 907154 - 907198
Alignment:
| Q |
76 |
aaagaaaacatgtaattcaatgaagttaattacatttagtaataa |
120 |
Q |
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|||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
907154 |
aaagaaaacatgtaattcaatgaagtgaatcacagttagtaataa |
907198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 17768356 - 17768397
Alignment:
| Q |
425 |
gaatcctaaactatgcaaaatccgttcggaatcgtttatgtt |
466 |
Q |
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| T |
17768356 |
gaatcctaaactatgcaaaatctgttcgaaatcatttatgtt |
17768397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 17768262 - 17768318
Alignment:
| Q |
351 |
accattgttgttaaaatcctcatcagaatcctaaaatcctacaattttgcgattttg |
407 |
Q |
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||||||||||||||| |||| ||||||||| | |||||||| ||||||||||||| |
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| T |
17768262 |
accattgttgttaaagtcctaatcagaatcgttgaatcctacgcttttgcgattttg |
17768318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 11321502 - 11321454
Alignment:
| Q |
376 |
gaatcctaaaatcctacaattttgcgattttgtgatgccttaccgattt |
424 |
Q |
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|||||||||||| |||| |||||||||||||| |||||||||||||| |
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| T |
11321502 |
gaatcctaaaattctaccattttgcgattttgctctgccttaccgattt |
11321454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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