View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7769_low_12 (Length: 459)
Name: NF7769_low_12
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 10614384 - 10613944
Alignment:
| Q |
1 |
gtggaagtggaacatttgctgcaaggatgagggaaagaaatgtgacagtcattacaagtacactgaatttggatggtccattcaacaacatggttgcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614384 |
gtggaagtggaacatttgctgcaaggatgagggaaagaaatgtgacggtcattacaagtacactgaatttggatggtccattcaacaacatggttgcatc |
10614285 |
T |
|
| Q |
101 |
aaggggtttgataccaatgcatattagcatttctcaaaggtttccattcttcgaaaacacgttggatattgtgcactctatggatgtcattggcaactgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614284 |
aaggggtttgataccaatgcatattagcatttctcaaaggtttccattcttcgaaaacacgttggatattgtgcactctatggatgtcattggcaactgg |
10614185 |
T |
|
| Q |
201 |
atgccagataccatgcttgagtttgtgttgtatgatatatacagggttttgaggccaggtggactattctggcttgaccatttcttctgctttggttcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614184 |
atgccagataccatgcttgagtttgtgttgtatgatatatacagggttttgaggccaggtggactattctggcttgaccatttcttctgctttggttcac |
10614085 |
T |
|
| Q |
301 |
agctcaacaaaacttatgtgccgatgttggatcgagttgggttcaataaactgcgatggcatgttggaatgaaacttgatcctaaggttcgaaaggatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614084 |
agctcaacaaaacttatgtgccgatgttggatcgagttgggttcaataaactgcgatggcatgttggaatgaaacttgatcctaaggttcgaaaggatgt |
10613985 |
T |
|
| Q |
401 |
gtggttgatttcagctctgatggagaaaccaatgatttgag |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10613984 |
gtggttgatttcagctctgatggagaaaccaatgatttgag |
10613944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 10610947 - 10610514
Alignment:
| Q |
8 |
tggaacatttgctgcaaggatgagggaaagaaatgtgacagtcattacaagtacactgaatttggatggtccattcaacaacatggttgcatcaaggggt |
107 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| |||||| |||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10610947 |
tggaacatttgctgcaagaatgagagaacgaaacgtgacaatcattacaagcacgctgaatttggatggtccattcaacaacatgattgcatcaaggggt |
10610848 |
T |
|
| Q |
108 |
ttgataccaatgcatattagcatttctcaaaggtttccattcttcgaaaacacgttggatattgtgcactctatggatgtcattggcaactggatgccag |
207 |
Q |
| |
|
|| ||| | ||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
10610847 |
ttaatatcgatgtatattagcatatctcaaaggtttccgttcttcgacaacacgttggatattgtgcattctagggatgtcattggcaattggatgccag |
10610748 |
T |
|
| Q |
208 |
ataccatgcttgagtttgtgttgtatgatatatacagggttttgaggccaggtggactattctggcttgaccatttcttctgctttggttcacagctcaa |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
10610747 |
ataccatggttgagtttgtgttgtatgatatatacagggtgttgaggccaggaggtctattctggcttgatcatttcttctgctttgcttcacagatcaa |
10610648 |
T |
|
| Q |
308 |
caaaacttatgtgccgatgttggatcgagttgggttcaataaactgcgatggcatgttggaatgaaacttgatcctaaggttcgaaaggatgtgtggttg |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||| |||| ||||||||| |
|
|
| T |
10610647 |
aaaaacttatgtgccgatgttggatagagttggattccataaactgcgatggcatgttggaatgaaagttgattctgtggttcaaaagaatgtgtggtac |
10610548 |
T |
|
| Q |
408 |
atttcagctctgatggagaaaccaatgatttgag |
441 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |
|
|
| T |
10610547 |
atttcagctctgttggaaaaaccaatgatttgag |
10610514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University