View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_13 (Length: 458)
Name: NF7769_low_13
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 36711567 - 36711182
Alignment:
| Q |
18 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgttcattgattttacgatgatt |
117 |
Q |
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| T |
36711567 |
gattatgcacatcttgattttatattgggtgataatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgctcattgattttacgatgatt |
36711468 |
T |
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| Q |
118 |
attatgtatgtaataactttctcatttagttgaatttcattagtgtgtgcgcttttttcccttctcatttgagtatgtaagatttccgtcaacattaaaa |
217 |
Q |
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| T |
36711467 |
attatgtatgtaataactttctcattaagttgaatttcattagtgtgtgtgctttttttctttctcatttgagtatgttagatttccgtcaaaattaaaa |
36711368 |
T |
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| Q |
218 |
caaaaagaatgtggtgtatgctagattcttctctttatttaatcatataattcatatttaatcaaataccattaattcatatttgcaattgttgttttga |
317 |
Q |
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| T |
36711367 |
caaaaagaatgtggtgtatgctagattcttctctttatttagtcatataattcatctttaatcaaataccattaattcatatttgcaattgttcttttga |
36711268 |
T |
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| Q |
318 |
atccaagattatgcttactctttatttttggttaatttaaaatttcccaacaaataagatacgtcttctcatttttcattcattgg |
403 |
Q |
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| T |
36711267 |
atccaagatgatgcttactctttatttttgattaatttaaaatttcccaacacataagatacgtcttcccatttttcattcattgg |
36711182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 36704420 - 36704328
Alignment:
| Q |
18 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgttcattgattttac |
110 |
Q |
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| T |
36704420 |
gattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccataatagcttttttcaactctcattgattttac |
36704328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 36677374 - 36677311
Alignment:
| Q |
19 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
82 |
Q |
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| T |
36677374 |
attatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36677311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 36687456 - 36687393
Alignment:
| Q |
19 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
82 |
Q |
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| T |
36687456 |
attatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36687393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 36664902 - 36664946
Alignment:
| Q |
50 |
caatgctaaacaagtcgtttatgatcccatgatagcttttttcaa |
94 |
Q |
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| T |
36664902 |
caatgctaaacaactcatttatgatcctatgatagcttttttcaa |
36664946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 30905744 - 30905847
Alignment:
| Q |
17 |
agattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgttcattgattttacgatgat |
116 |
Q |
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|||||||||||||||||||||| | || | || |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
30905744 |
agattatgcacatgctgattttgttatggccgtcagtgctaaacaagtggtttatgatcccatgatagcttttttcaacgctcattaattttacaatgat |
30905843 |
T |
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| Q |
117 |
tatt |
120 |
Q |
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|||| |
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| T |
30905844 |
tatt |
30905847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 30912212 - 30912288
Alignment:
| Q |
19 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaac |
95 |
Q |
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| T |
30912212 |
attatgcacatgctgattttattatgagtgtcaccgctaaacaagacgtttatgatcccatgatagattttttcaac |
30912288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 11294987 - 11295073
Alignment:
| Q |
19 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgttcattgat |
105 |
Q |
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| T |
11294987 |
attatgctcatgctgattttattttaggtgtcaaagctaaacaagacgtttatgatcccatgatagattttttcaatgctcattgat |
11295073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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