View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7769_low_14 (Length: 438)

Name: NF7769_low_14
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7769_low_14
NF7769_low_14
[»] chr7 (4 HSPs)
chr7 (5-422)||(33993025-33993440)
chr7 (1-247)||(33983525-33983771)
chr7 (101-240)||(34005117-34005256)
chr7 (130-244)||(34014968-34015082)
[»] chr6 (4 HSPs)
chr6 (7-222)||(9237705-9237920)
chr6 (131-222)||(9218321-9218412)
chr6 (157-227)||(30420188-30420258)
chr6 (158-227)||(30381395-30381464)
[»] chr4 (3 HSPs)
chr4 (131-222)||(15158555-15158646)
chr4 (131-222)||(15158940-15159031)
chr4 (167-204)||(16945520-16945557)
[»] chr5 (2 HSPs)
chr5 (131-222)||(14092169-14092260)
chr5 (171-230)||(14103822-14103881)
[»] chr2 (2 HSPs)
chr2 (168-230)||(37264262-37264324)
chr2 (161-235)||(8004892-8004966)
[»] chr1 (1 HSPs)
chr1 (186-230)||(6588298-6588342)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 422
Target Start/End: Complemental strand, 33993440 - 33993025
Alignment:
Q  5 atacctattgaccatattgaaatgcttccagcaacttgtgcaatattttcatcttggccaagtgccactaaaattggtttggtaaaaatgtaaattggaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993440 atacctattgaccatattgaaatgcttccagcaacttgtgcaatattttcatcttggccaagtgccactaaaattggtttggtaaaaatgtaaattggaa 33993341  T
Q  105 gaagaagaattgaggttaagaatataactatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33993340 gaagaagaattgaggttaagaatataactatccatgatctttgaagatacactccaagcatttcatattgttttgctccatatgcttgtccacatagtgt 33993241  T
Q  205 ttctaatgcacttgccatacccaactacaattttcaatttgcacnnnnnnncattgtaaataagtttagcttattttttcatatgcaagatatgaatgca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  33993240 ttctaatgcacttgccatacccaactacaattttcaatttgcacaaaaaaacattgtaaataagtttagcttattttttcatatgcaagatacgaataca 33993141  T
Q  305 --nnnnnnnngacaagaaaagaaagaataacaagatacgaatacataaagattatttatcaaagcaaaattttcataaattgcaatcaaccgcaattgta 402  Q
              |||    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33993140 ttttttttttgac----aaaaaaagaataacaagatacgaatacataaagattagttatcaaagcaaaattttcataaattgcaatcaaccgcaattgta 33993045  T
Q  403 cttgtgacatatggtttttg 422  Q
    ||||||||||||||||||||    
T  33993044 cttgtgacatatggtttttg 33993025  T

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Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 33983771 - 33983525
Alignment:
Q  1 tactatacctattgaccatattgaaatgcttccagcaacttgtgcaatattttcatcttggccaagtgccactaaaattggtttggtaaaaatgtaaatt 100  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||| ||| |||||||||||||||| ||||||||||  ||||||||||||| |||    
T  33983771 tactatacctattgaccatattgaaatgcttcctgcagcatgtgcaatacttttatcttggccaagtgcctctaaaattggagtggtaaaaatgtatatt 33983672  T
Q  101 ggaagaagaagaattgaggttaagaatataactatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacata 200  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33983671 ggaagaagaaaaattgaggttatgaataaaactattcatgatctttgaagatatactcctagcatatcatattgttttgctccatatgcttgtccacata 33983572  T
Q  201 gtgtttctaatgcacttgccatacccaactacaattttcaatttgca 247  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||    
T  33983571 gtgtttccaatgcacttgccatacctagctacaattttcaatttgca 33983525  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 34005256 - 34005117
Alignment:
Q  101 ggaagaagaagaattgaggttaagaatataactatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacata 200  Q
    |||||||||| || ||  |||| ||||| |||||||||||||||||||||||| ||||| | |||  |||||| |||||| ||||||||||||||||| |    
T  34005256 ggaagaagaacaagtgcagttaggaataaaactatccatgatctttgaagatatactcccatcattccatattcttttgcaccatatgcttgtccacaaa 34005157  T
Q  201 gtgtttctaatgcacttgccatacccaactacaattttca 240  Q
    | |||   || ||| | ||||| |||||||||||||||||    
T  34005156 gggttgacaacgcagtcgccattcccaactacaattttca 34005117  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 34015082 - 34014968
Alignment:
Q  130 aactatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccatacccaac 229  Q
    |||||||||||||||||||||||||||||| |  |   |||||| |||||| || ||||||||||||||||||||| | |||||||| ||||| || |||    
T  34015082 aactatccatgatctttgaagatacactcccattaggccatattcttttgcaccgtatgcttgtccacatagtgttgccaatgcactagccattcctaac 34014983  T
Q  230 tacaattttcaattt 244  Q
    || || | |||||||    
T  34014982 taaaaatatcaattt 34014968  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 9237705 - 9237920
Alignment:
Q  7 acctattgaccatattgaaatgcttccagcaacttgtgcaatattttcatcttggccaagtgccactaaaattggtttggtaaaaatgtaaattggaaga 106  Q
    |||||||||||| | ||||||  |||| || ||||||||||| ||||  ||||| |||| |||| ||||||||||| | ||||| |||||||  || |||    
T  9237705 acctattgaccaaagtgaaattgttcctgccacttgtgcaatttttttgtcttgtccaaatgcctctaaaattggtgttgtaaatatgtaaagaggcaga 9237804  T
Q  107 agaagaattgaggttaagaatataactatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgttt 206  Q
    || |  ||||  ||  | || |  |||||||| |||||||| |||||||||||||||||    ||||||||||||||||||||||||||||| |||||||    
T  9237805 agtaagattgttgtggaaaacaatactatccaagatctttgtagatacactccaagcatgctgtattgttttgctccatatgcttgtccacaaagtgttt 9237904  T
Q  207 ctaatgcacttgccat 222  Q
    | ||||||||||||||    
T  9237905 ccaatgcacttgccat 9237920  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 9218321 - 9218412
Alignment:
Q  131 actatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccat 222  Q
    |||||||| |||||||| ||| ||||||||||||| |  |||||||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  9218321 actatccaagatctttgtagaaacactccaagcatgttgtattgttttgctccatatgcctgtccacaaagtgtttccaatgcacttgccat 9218412  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 30420188 - 30420258
Alignment:
Q  157 tccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccataccca 227  Q
    ||||| ||||| |||||||| ||||||||||||||| ||||| | ||| ||||||||||||| ||||||||    
T  30420188 tccaaccatatgatattgttgtgctccatatgcttgcccacaaaatgtgtctaatgcacttgacataccca 30420258  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 30381395 - 30381464
Alignment:
Q  158 ccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccataccca 227  Q
    |||| ||||| |||||| ||||||||||||||||| ||||| | ||| |||| |||||||| || |||||    
T  30381395 ccaaccatatgatattgctttgctccatatgcttgaccacaaaatgtgtctagtgcacttgacacaccca 30381464  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 15158555 - 15158646
Alignment:
Q  131 actatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccat 222  Q
    |||||| | |||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15158555 actatctaagatctttgtagatacactccaagcattttgtattgttttgctccatatgcttgtccacaaagtgtttccaatgcacttgccat 15158646  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 15159031 - 15158940
Alignment:
Q  131 actatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccat 222  Q
    |||||| | |||||||| ||||||||||||||||| |  |||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  15159031 actatctaagatctttgtagatacactccaagcattttgtattgttttgctccatatacttgtccacaaagtgtttccaatgcacttgccat 15158940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 16945520 - 16945557
Alignment:
Q  167 tcatattgttttgctccatatgcttgtccacatagtgt 204  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  16945520 tcatatttttttgctccaaatgcttgtccacatagtgt 16945557  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 14092260 - 14092169
Alignment:
Q  131 actatccatgatctttgaagatacactccaagcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccat 222  Q
    ||||||||||||| ||| |  || ||||| | ||| | ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14092260 actatccatgatcgttgcatgtatactcctaacatgtaatattgttttgctccatatgcttgtccacataaagtttctaatgcacttgccat 14092169  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 14103881 - 14103822
Alignment:
Q  171 attgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccatacccaact 230  Q
    ||||||| |||||| |||||||||||||||| ||||| || || |||| |||||||||||    
T  14103881 attgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacccaact 14103822  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 37264324 - 37264262
Alignment:
Q  168 catattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccatacccaact 230  Q
    |||||| || ||||||||||||||||||||||||||| || | ||||||| ||||||||||||    
T  37264324 catatttttctgctccatatgcttgtccacatagtgtctcaactgcacttcccatacccaact 37264262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 8004892 - 8004966
Alignment:
Q  161 agcatatcatattgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccatacccaactacaat 235  Q
    ||||| |||||||  ||||| ||||||||||||||||||| ||| || | ||||||| |||| ||||||| ||||    
T  8004892 agcatttcatatttgtttgcaccatatgcttgtccacataatgtctccactgcacttcccatgcccaactgcaat 8004966  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 6588298 - 6588342
Alignment:
Q  186 atgcttgtccacatagtgtttctaatgcacttgccatacccaact 230  Q
    ||||||| ||||||||||| || ||||||||| ||||||||||||    
T  6588298 atgcttgcccacatagtgtctccaatgcacttcccatacccaact 6588342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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