View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_15 (Length: 438)
Name: NF7769_low_15
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 18728332 - 18727982
Alignment:
| Q |
9 |
gagtgagaagaatattgagaagcattttgacaatgctcttggcttcgaagagaaacgggaatccggtaatgaaggtaatgtctatttgaga--------- |
99 |
Q |
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| T |
18728332 |
gagtgggaagaatattgagaagcattttgacaatgctcttggcttcgaagagaaacgggaatccggtaatgaaggtaatctctatttgagatcagtgaat |
18728233 |
T |
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| Q |
100 |
------caggagagtgtgatgaatatcgaaaagaatttcgatactgctcttgaatttgaagagaaaggggaatccaacaatgaaggtaatttctactttt |
193 |
Q |
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| T |
18728232 |
atgctgccggatagtgtgatgaatatcgaaaagaatttcgatactgctcttgaatttgaagagaaaggggaatccaacaatgaaggtaatttctactttt |
18728133 |
T |
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| Q |
194 |
tgagattgttat--tgaatatcttttattttctgaatggattgaagtaagtctgttatgttttgtgcagataggaattttgaatcgttggttttgatgtc |
291 |
Q |
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| T |
18728132 |
tgagattgttatattgaatatcttttattttctgaatggattgaagtgagtctgttatgttttgtgtagataggaattttgaatcgttggttttgatgtc |
18728033 |
T |
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| Q |
292 |
tgaggtggaatctaatttggtttcacatgacaatggatcaactgttaaaga |
342 |
Q |
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| T |
18728032 |
tgaggtggaatctaatttggtttcacatgacaatggatcaactgttaaaga |
18727982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 18727953 - 18727874
Alignment:
| Q |
341 |
gacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
420 |
Q |
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| T |
18727953 |
gacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
18727874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 43753658 - 43753578
Alignment:
| Q |
340 |
agacataaaagagcagcatttgagttctataaaaaatatgtatgactcagattccatacttgagctggagagggtgaagag |
420 |
Q |
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| T |
43753658 |
agacataaaagagcagcatttgagttcaacacaaaatatgcatgactcggattccaaacttgagttggagagggtgaagag |
43753578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 18728443 - 18728353
Alignment:
| Q |
9 |
gagtgagaagaatattgagaagcattttgacaatgctcttggcttcgaagagaaacgggaatccggtaatgaaggtaatgtctatttgaga |
99 |
Q |
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| T |
18728443 |
gagtgagaaaaatattgagaagaattttgataccgctcttagttttgaagagaaaggggaattcagtcatgaagatagtttctatttgaga |
18728353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 43753744 - 43753708
Alignment:
| Q |
290 |
tctgaggtggaatctaatttggtttcacatgacaatg |
326 |
Q |
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| T |
43753744 |
tctgaggtggtatctgatttggtttcacatgacaatg |
43753708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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