View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_17 (Length: 379)
Name: NF7769_low_17
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 40031111 - 40031456
Alignment:
| Q |
16 |
acatcactgtacagtctcgctatggctttattcagcctttaggagttcattatactaatgctaaaattagatatttgttagaattagtaaggcttcttgt |
115 |
Q |
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| T |
40031111 |
acatcactgtacagtctcgctatggctttattcagcctttaggagttcattatactaatgctaaaattagatatttgttagaattagtaaggcttcttgt |
40031210 |
T |
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| Q |
116 |
gctgcttgtaaatctgctttgagtttggaatcatatgtgtttagagatttctctatgtaattaatcttgctgagnnnnnnnntatgggatgtctgctatg |
215 |
Q |
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| T |
40031211 |
gctgcttgtaaatctgctttgagtttggaatcatgtgtgtttagagatttctctatgtaattaatcttgctgagaaaaaaaatatgggatgtctgctatg |
40031310 |
T |
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| Q |
216 |
cttgcaaatcattcaagttcgttaagatcttttgactcttgagttgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatga |
315 |
Q |
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| T |
40031311 |
cttgcaaatcattcaagttcgttaagatcttttgactcttgagatgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatga |
40031410 |
T |
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| Q |
316 |
cttgtttttctgttgtattaccattgttattcttcggttaattgac |
361 |
Q |
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| T |
40031411 |
cttgtttttctgttgtattaccattgttattcttcggtttattgac |
40031456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 40036414 - 40036531
Alignment:
| Q |
29 |
gtctcgctatggctttattcagcctttaggagttcattatactaatgctaaaattagatatttgttagaattagtaaggcttcttgtgctgcttgtaaat |
128 |
Q |
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| T |
40036414 |
gtcttgctatggttttattcagtctttaagagttcattatattaatgctaaaattagatatttgttagaattagtaaggcttcttgtggtacttgtaaat |
40036513 |
T |
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| Q |
129 |
ctgctttgagtttggaat |
146 |
Q |
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| T |
40036514 |
gtgctttgagtttggaat |
40036531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 349
Target Start/End: Original strand, 40036597 - 40036788
Alignment:
| Q |
150 |
atgtgtttagagatttctct-atgtaattaatcttgctgagnnnnnnnntatgggatgtctgctatgcttgcaaatcattcaagttcgttaagatctttt |
248 |
Q |
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| T |
40036597 |
atgtgtttagagatttctcttatgcaattaatcttgctaagaaaaaa---atgggatgtctgctatgcttgcaaatcattcaaggt-------atatttt |
40036686 |
T |
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| Q |
249 |
gactcttgagttgctgctatggcgtaattgaatcatcttgatagtgtttgcataa-tcttctccatgacttgtttttctgttgtattaccattgttattc |
347 |
Q |
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| T |
40036687 |
gaccccttggttgctgctatgttgtaattgaaccatcttgttagtgtttgcataatttttttccttgacttgtatttctgttatattaccattgttattc |
40036786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 1347132 - 1347004
Alignment:
| Q |
213 |
atgcttgcaaatcattcaagttcgtt-----aagatctttt-gactcttgagttgctgctatggcgtaattgaatcatcttgatagtgtttgcataatct |
306 |
Q |
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|||||||||||||||||||| || || |||||||||| ||||||||| ||||| ||||| ||||||||| |||||| | |||||| | || ||| | |
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| T |
1347132 |
atgcttgcaaatcattcaaggtctttgagataagatctttttgactcttgaattgcttctatgacgtaattgattcatctcgttagtgtatacacaattt |
1347033 |
T |
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| Q |
307 |
tctccatgacttgtttttctgttgtatta |
335 |
Q |
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| T |
1347032 |
tcttcatgacttgtttttctgttatatta |
1347004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 19807670 - 19807748
Alignment:
| Q |
240 |
agatcttttgactcttgagttgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatgactt |
318 |
Q |
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| T |
19807670 |
agatcttttgactcttcaattgctgctaatgcgtaattgaatcagcttgttagtgttagcacaattttctccatgactt |
19807748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 19968768 - 19968685
Alignment:
| Q |
240 |
agatcttttgactcttgagttgctgctatggcgtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttt |
323 |
Q |
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| T |
19968768 |
agatatttttactcttgaattgctgctacggcgtaattgaatcaacttgtttgtgtgcgcataactttctccatgacttctttt |
19968685 |
T |
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