View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_18 (Length: 364)
Name: NF7769_low_18
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 30677529 - 30677865
Alignment:
| Q |
13 |
actataatgatggccaagctttggactactctaaagggcttaaatgttgtttctgatcaataaatatttattctgacctataaggtggtaaaaaatttaa |
112 |
Q |
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| T |
30677529 |
actataatgatggccaagctttggactactctaaaggg-ttaaatgttgtttctgatcaataaatatttattctgacctataaggtggtaaaaaatttaa |
30677627 |
T |
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| Q |
113 |
ttattgggttctactccacatttttctatcnnnnnnnn---gtattgagttattgtatcaacaatgacttgccatgcaaaatcccataatgctctctaat |
209 |
Q |
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| T |
30677628 |
ttattgggttctactccacatttttctatcaaaaaaaaaaagtattgagttattgtatcaacattgacttgccatgcaaaatcccataatgctctctaat |
30677727 |
T |
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| Q |
210 |
tgaatttgcttctgtttagacaatagaatagtgaattgttctaactcaaaaaggcatgcttctgtttccattcgttaattctcaaagtgaatttttcctg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30677728 |
tgaatttgcttctgtttagacaatagaatagtgaattgttctaactcaaaaaggcatgcttctgtttccattcgttaattctcaaagtgaatttttcctg |
30677827 |
T |
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| Q |
310 |
actttgtttcttcaattgtgacattacatgatcttgat |
347 |
Q |
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| T |
30677828 |
actttgtttcttcaattatgtcattacatgatcttgat |
30677865 |
T |
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