View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_21 (Length: 334)
Name: NF7769_low_21
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 37329596 - 37329301
Alignment:
| Q |
25 |
tgtcaggcttaaaaggaccaatnnnnnnn-tgggatgactttgaaaaggaagagagaatggaaaagagagagaaatcattcgccttatctgaaagagtga |
123 |
Q |
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| T |
37329596 |
tgtcaggcttaaaaggaccaataaaaaaaatgggatgactttgaaagggaagagagaaaggaaaagagagagaaatcattcgccttaattgaaagagtga |
37329497 |
T |
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| Q |
124 |
tattgaagttgatgaaagagtaatgactttgattttccactataacnnnnnnnnnnnnntatgtgaaagttatttaaaatcatgtaaaatccccaaactc |
223 |
Q |
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| T |
37329496 |
tatggaagatgatgaaagagtaatgactttgattttccactataacaaaaaatgaaaaatatgtgaaagttatttaaaatcatgtaaaatccccaaactc |
37329397 |
T |
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| Q |
224 |
ctctctcaatgcactttgcctgcctcaagttgaagggttatgatcgagtgatgcaaaaaactttaatgcaacgagactactctcccttctcctttt |
319 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37329396 |
ctctctcaatgcactttgcctgcctcaaattgaagggttttgatcgagtgaagcaaaaaaatttaatgcaacgagactactctcccttctcctttt |
37329301 |
T |
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