View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_22 (Length: 334)
Name: NF7769_low_22
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 27007368 - 27007684
Alignment:
| Q |
1 |
acttacttctctccacgctgaaggagtgtttgaagtatccgagaacggtggtgattctaatacggagacaaaacaactacaggcgaagccatgcaacaac |
100 |
Q |
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| T |
27007368 |
acttacttctctccacgctgaaggagtgtttgaagtatccgagaacggtggtgattctaatacggagacaaaacaactacaggcgaagccttgcaacaac |
27007467 |
T |
|
| Q |
101 |
ttaaacgcctttgatatcatctccttctcatctggttttgatctatccggtttgttcgaagacacaattcaaaagaaagagatgcggtttacgtctaaca |
200 |
Q |
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| T |
27007468 |
ttaaacgcctttgatatcatctccttctcatctggttttgatctatccggtttgttcgaagacacaattcaaaagaaagagatgcggtttacgtctaaca |
27007567 |
T |
|
| Q |
201 |
agcctgcatcaactataatctctaagttggaagagatttgcaagtgtcttcaattgaaagtaaagaaaaaagatggaggtttgttaaagttggaaggatc |
300 |
Q |
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| T |
27007568 |
agcctgcatcaactataatctctaagttggaagagatttgcaagtgtcttcaattgaaagtaaagaaaaaagatggaggtttgttaaagttggaaggatc |
27007667 |
T |
|
| Q |
301 |
aaaggaaggtaggaaag |
317 |
Q |
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| T |
27007668 |
aaaggaaggtaggaaag |
27007684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 317
Target Start/End: Complemental strand, 9994502 - 9994357
Alignment:
| Q |
172 |
aaagaaagagatgcggtttacgtctaacaagcctgcatcaactataatctctaagttggaagagatttgcaagtgtcttcaattgaaagtaaagaaaaaa |
271 |
Q |
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||||| ||| |||||||||||||||||||||||||| |||| || ||||| ||||| ||||| ||||| || |||| | ||||| ||||||||| |
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| T |
9994502 |
aaagacagaaatgcggtttacgtctaacaagcctgcttcaatcatcatctccaagtttgaagaaatttgtaatcgtctcgggctaaaagtgaagaaaaaa |
9994403 |
T |
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| Q |
272 |
gatggaggtttgttaaagttggaaggatcaaaggaaggtaggaaag |
317 |
Q |
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| T |
9994402 |
gatggaggtttgttcaagatagaaggttccaaggaaggaaggaaag |
9994357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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