View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7769_low_23 (Length: 321)

Name: NF7769_low_23
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7769_low_23
NF7769_low_23
[»] chr5 (3 HSPs)
chr5 (16-288)||(28532493-28532765)
chr5 (94-149)||(29021558-29021613)
chr5 (97-150)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (20-205)||(6588466-6588648)
chr6 (92-203)||(6416827-6416938)
[»] chr3 (4 HSPs)
chr3 (92-203)||(13469859-13469970)
chr3 (92-214)||(51763574-51763696)
chr3 (20-53)||(514011-514044)
chr3 (97-142)||(513925-513970)
[»] chr1 (2 HSPs)
chr1 (103-214)||(19467621-19467732)
chr1 (20-53)||(19467779-19467812)
[»] chr4 (6 HSPs)
chr4 (103-203)||(21833493-21833593)
chr4 (102-191)||(532589-532681)
chr4 (20-52)||(1601193-1601225)
chr4 (20-54)||(21833639-21833673)
chr4 (92-190)||(53761012-53761110)
chr4 (20-53)||(53761152-53761185)
[»] chr7 (1 HSPs)
chr7 (103-197)||(10615459-10615553)
[»] chr8 (1 HSPs)
chr8 (97-150)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 28532493 - 28532765
Alignment:
Q  16 gacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 115  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532493 gacatcaatgtcggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 28532592  T
Q  116 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  28532593 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccatt 28532692  T
Q  216 gttataactacgagtccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcg 288  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  28532693 gttataactacgagttcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg 28532765  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  94 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 149  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  97 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 150  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 6588648 - 6588466
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgct 119  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| |    
T  6588648 tcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgtt 6588552  T
Q  120 gaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 205  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588551 gaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  92 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 191  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  192 aagtgagagagc 203  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  92 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 191  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  192 aagtgagagagc 203  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  92 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 191  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  192 aagtgagagagcctctatcccat 214  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaat 53  Q
    ||||||||||||||||||||||||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  97 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 142  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  103 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 202  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  203 cctctatcccat 214  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 19467812 - 19467779
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaat 53  Q
    ||||||||||||||||||||| ||||||||||||    
T  19467812 tcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  103 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 202  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  203 c 203  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  102 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 191  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 1601193 - 1601225
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaa 52  Q
    |||||||||||||||||||||||||||||||||    
T  1601193 tcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 21833673 - 21833639
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaatg 54  Q
    ||||||||||||||||||||||||| |||||||||    
T  21833673 tcaatgttggtctctcacggagagctgaagcaatg 21833639  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  92 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 190  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 53761185 - 53761152
Alignment:
Q  20 tcaatgttggtctctcacggagagcagaagcaat 53  Q
    ||||||||||||| ||||||||||||||||||||    
T  53761185 tcaatgttggtctttcacggagagcagaagcaat 53761152  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  103 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 197  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  97 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 150  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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