View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7769_low_24 (Length: 320)
Name: NF7769_low_24
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 3509225 - 3508927
Alignment:
| Q |
9 |
gaagaatatacccattgagagatgaggtagaattcatacaaaaactctttgaaggacttatacgatttagtagatactgacttgtacacttgtacaaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3509225 |
gaagaatatacccattgagagatgaggtagaattcatacaaaaactctttgaaggacttatacgatttagtagatactgacttgtacacttgtacaaata |
3509126 |
T |
|
| Q |
109 |
gtcaggtgtcatccaattcaaactcctagggtcaaaacatttggacaataccattgttcttcagacaataacatctcaaagaatctttgaggatgactac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3509125 |
gtcaggtgtcatccaattcaaactcctagggtaaaaacatttggacaatatcattgttcttcagaca--aacatctcaaagaatctttgaggatgactac |
3509028 |
T |
|
| Q |
209 |
tatcagaggataaaatccgagatcagagggttatttctttgatctgcatatggtgatatttactaatcctgcctgtcttttgccgatctgcatgtgatga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3509027 |
tatcagaggataaaatccgagatcagagggttatttctttgatatgcatatggtgatatttactaatcctgcctgtcttttgccgatttgcatgtgatga |
3508928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University