View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_25 (Length: 320)
Name: NF7769_low_25
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 34651790 - 34651492
Alignment:
| Q |
9 |
gaagaatatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatgtttcatgatctgcactcacattaacttccccttgtttaaat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34651790 |
gaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatgtttcatgatctacactcacattaacttccccctgtttaaat |
34651691 |
T |
|
| Q |
109 |
gccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctttccagtaatgtccttaacaacatggttatacttttctgacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34651690 |
gccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctttccagtaatgtccttaacaacatggttatacttttctgacc |
34651591 |
T |
|
| Q |
209 |
aatgtgcagctgttggaactgccatctctgccactgcatggaatggtggatagtggttgagacctgaccatatttttactgaacttgttagcacaattt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34651590 |
aatgtgcagctgttggaactgccatctctgccactgcatggaatggtggatagtggttgagacctaaccatatttttactgaacttgttagcacaattt |
34651492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 24407440 - 24407142
Alignment:
| Q |
9 |
gaagaatatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatgtttcatgatctgcactcacattaacttccccttgtttaaat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24407440 |
gaagaaaatagctagtagtagtactagtactcaatcagaaaaatcttcaccagaagatgtttcatgatctgcactcacattaacttccccttgtttaaat |
24407341 |
T |
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| Q |
109 |
gccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctttccagtaatgtccttaacaacatggttatacttttctgacc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24407340 |
gccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctttctagtaatgtccttaacaacatggttatacttttctgacc |
24407241 |
T |
|
| Q |
209 |
aatgtgcagctgttggaactgccatctctgccactgcatggaatggtggatagtggttgagacctgaccatatttttactgaacttgttagcacaattt |
307 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
24407240 |
aacgtgcagttgttggaactgccatctctgccactgcatggaatggtggatagtggttgagacctgaccatatttttactaaactagttagcacaattt |
24407142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 28909901 - 28909975
Alignment:
| Q |
206 |
accaatgtgcagctgttggaactgccatctctgccactgcatggaatggtggatagtggttgagacctgaccata |
280 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| ||| ||| ||||||| ||||||| |||||| |||| |
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| T |
28909901 |
accactgtgcagctgttggaaccgccatctctgccactgaatgaaattgtggataatggttgaaacctgatcata |
28909975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 38576997 - 38577167
Alignment:
| Q |
88 |
ttaacttccccttgtttaaatgccttggctatttcatcaataggaatcaaaggcaaatatccaaacactgtgtatccctttccagtaatgtccttaacaa |
187 |
Q |
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|||||||| || || ||||||||||| | ||| ||| |||||||||||||| ||||| |||| | | || |||||||||| |||||||| | |
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| T |
38576997 |
ttaacttctccctgcttaaatgccttagatatagcatttataggaatcaaaggtaaatacccaacaaaactataaccctttccagccatgtccttgattg |
38577096 |
T |
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| Q |
188 |
catggttatacttttctgaccaatgtgcagctgttggaactgccatctctgccactgcatggaatggtgga |
258 |
Q |
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||||||| ||||| || ||||| || ||||| || |||| || ||||||||||||||||||||||||||| |
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| T |
38577097 |
catggttgtacttctcagaccagtgagcagcagtgggaattgttatctctgccactgcatggaatggtgga |
38577167 |
T |
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