View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_28 (Length: 276)
Name: NF7769_low_28
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_28 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 17059722 - 17059965
Alignment:
| Q |
18 |
atgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggtt |
117 |
Q |
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| T |
17059722 |
atgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggtt |
17059821 |
T |
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| Q |
118 |
atattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgatta |
217 |
Q |
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| T |
17059822 |
atattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaata |
17059921 |
T |
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| Q |
218 |
tgaaaatgatgtataaaacttgtttaatttctaagtttgtgatg |
261 |
Q |
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| T |
17059922 |
tgaaaatgatgtataaaacttgtttaatttctgagtttgtgatg |
17059965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 43262334 - 43262238
Alignment:
| Q |
147 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgttta |
243 |
Q |
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| T |
43262334 |
tttttgagaaaatgaattttcatggatttagcactaattttggaatctacttctcatgtggagaatggatatgaaaatgatgcacaagacttgttta |
43262238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 36229097 - 36229176
Alignment:
| Q |
168 |
atggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaattt |
247 |
Q |
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| T |
36229097 |
atggatttagtactaattttggaatctacttctcacgtggagaatgaatatgaaaataatgcacaagacttgtttaattt |
36229176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 1643 - 1886
Alignment:
| Q |
18 |
atgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggtt |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1643 |
atgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgcttctatttttggttgattaacttaatttaaatatggtt |
1742 |
T |
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| Q |
118 |
atattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgatta |
217 |
Q |
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| T |
1743 |
atattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatttggagaatgaata |
1842 |
T |
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| Q |
218 |
tgaaaatgatgtataaaacttgtttaatttctaagtttgtgatg |
261 |
Q |
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| T |
1843 |
tgaaaataatgtataaaacttgtttaatttctgagtttgtgatg |
1886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 8245 - 8488
Alignment:
| Q |
18 |
atgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggtt |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8245 |
atgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgcttctatttttggttgattaacttaatttaaatatggtt |
8344 |
T |
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| Q |
118 |
atattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgatta |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8345 |
atattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatttggagaatgaata |
8444 |
T |
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| Q |
218 |
tgaaaatgatgtataaaacttgtttaatttctaagtttgtgatg |
261 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
8445 |
tgaaaataatgtataaaacttgtttaatttctgagtttgtgatg |
8488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 46 - 258
Target Start/End: Original strand, 48223016 - 48223226
Alignment:
| Q |
46 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |
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| T |
48223016 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatcaggttatat---atgattgtttctatagaagtt |
48223112 |
T |
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| Q |
146 |
atttt-ttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaa |
244 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
48223113 |
atttttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatctggagaatgaatatgaaaatgatgtataaaacttgtttaa |
48223212 |
T |
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| Q |
245 |
tttctaagtttgtg |
258 |
Q |
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| T |
48223213 |
tttctgagtttgtg |
48223226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 48223411 - 48223510
Alignment:
| Q |
147 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaatt |
246 |
Q |
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||||| |||||||||||||| || |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||| || | |||||||||| |
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| T |
48223411 |
tttttgagaaaatgaattttcatagatttagtactaattttgtaatctactcctcatgtggagaatgtatatgaaaatgatgtagaagatttgtttaatt |
48223510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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