View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7769_low_31 (Length: 254)
Name: NF7769_low_31
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 39356803 - 39357025
Alignment:
| Q |
18 |
atatgtaacatacattttcagaatgtatataactttcatatcctagaatactctgcacaactaattaactaattctattctataatgtctaaatgacgat |
117 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39356803 |
atatgttacatacattttcagaatgcatataactttcatatcctagaatactctgcacaactaattaactaattctattctataatgtttaaatgacgat |
39356902 |
T |
|
| Q |
118 |
gacttcacaagcagacaagcactaccttacagactaacaaagatttgtcaacatctttatccttcaattcattaaaactatcaaggtttaaaatagttaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39356903 |
gacttcacaagcagacaagcactacctaacaaactaacagagatttgtcaacatctttatccttcaattcattaaaactatcaaggtttaaaatagttaa |
39357002 |
T |
|
| Q |
218 |
ctaccatatccagaatgatgtcc |
240 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
39357003 |
ctaccatatccagaatgacgtcc |
39357025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University