View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_5 (Length: 579)
Name: NF7769_low_5
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 564
Target Start/End: Original strand, 35299329 - 35299885
Alignment:
| Q |
2 |
cgagtttggagttaaggattttaagttcgttgaggagggtagcactaactgcgaatgcaactgagctatgtattgctgccacaccaagaaaatctgcagc |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||| ||||| || || |||||| | |
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| T |
35299329 |
cgagttcggagttaaggattttaagttcgttgaggagcgtagcagtgactgcgaatgcaaccgagctatgtattatcgccaccttaaaaatatctgcttc |
35299428 |
T |
|
| Q |
102 |
caattcttgtccagtcataactccgaatcgaaaatcatctaattgttttaacgccaacaattgaggcacaatactaaacagtataggcacgccaaatccc |
201 |
Q |
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| T |
35299429 |
caactgttctttagtcatatctccgaatcgaaaatcatttactacttctaacaccaagaatttaggcacaatactaaacagtataggcacgacaaatccc |
35299528 |
T |
|
| Q |
202 |
atgattgcaatggtccaaaccttgtgtcctgttctcattaccatgctcaaatccatttgcacagcagcgataaagatgtaaagtacataaccaattaatg |
301 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
35299529 |
atgattgtaatggtccaaaccttgtgtcctgttctcattaccatgctcaaatccatttgcacagcagtggtaaagatgtaaagtccataaccaattaatg |
35299628 |
T |
|
| Q |
302 |
atatggttgcaagtatgtcttgacttccatatggaaacaacatctttttgtatttgtcagattccacatgttgaattgaagggcctagaattaggccagc |
401 |
Q |
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| T |
35299629 |
atattgttgcaagtatgtcttgacttccatatggaaacaacaacttcttgtatttgtcaaattccgcattttgaattgaaggtcctagaattaggccaac |
35299728 |
T |
|
| Q |
402 |
ctacaaatggatacaattttgtgaggcatatatattacaacctatatgaatctatacaaaaaacaacatgtaaaagaataacacttactatcattggtgc |
501 |
Q |
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| T |
35299729 |
ctacagatggatacaattttgtcaggc----atattacaacctatatgaatctatacaaaaa--agcatgtaaaagaatagcacttactatcattggtgc |
35299822 |
T |
|
| Q |
502 |
aataaatgcagggaaatgcaaacgttttacgaagaaattgcagatttgtgtgatagtaaaaat |
564 |
Q |
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| T |
35299823 |
aataaatgcagggaaatgcaaacgttttaggaagaaattgcagatttgtgtgatagtaaaaat |
35299885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 2 - 456
Target Start/End: Complemental strand, 5622390 - 5621942
Alignment:
| Q |
2 |
cgagtttggagttaaggattttaagttcgttgaggagggtagcactaactgcgaatgcaactgagctatgtattgctgccacaccaagaaaatctgcagc |
101 |
Q |
| |
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|||||| ||||||||| ||||||||||| |||||||| |||||| | |||||||||||||| |||||||||||| | |||| | | || |||| || |
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| T |
5622390 |
cgagttcggagttaagaattttaagttcattgaggagtgtagcagtgactgcgaatgcaaccgagctatgtattcttaccaccctataaatatctacaat |
5622291 |
T |
|
| Q |
102 |
caattcttgtccagtcataactccgaatcgaaaatcatctaattgttttaacgccaacaattgaggcacaatactaaacagtataggcacgccaaatccc |
201 |
Q |
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| T |
5622290 |
caaatgtggtttagtcacatcttcgaatcgataat-attt--ttctagtaacaccacaaattgaggcacaaaactaaacagtataggcacgacaaatccc |
5622194 |
T |
|
| Q |
202 |
atgattgcaatggtccaaaccttgtgtcctgttctcattaccatgctcaaatccatttgcacagcagcgataaagatgtaaagtacataaccaattaatg |
301 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || | ||||||||||||| |||||||||||||||| |
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| T |
5622193 |
attattgcaatggtccaaaccttgtgtcctgttctggttaccatgctcaaatcaatttgcacaccaatggtaaagatgtaaagcacataaccaattaatg |
5622094 |
T |
|
| Q |
302 |
atatggttgcaagtatgtcttgacttccatatggaaacaacatctttttgtatttgtcagattccacatgttgaattgaagggcctagaattaggccagc |
401 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
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| T |
5622093 |
atattgttgcaagtatgtcttgacttccatatggaaacaatagcttcttgtatttgtcaaattccgcatgttgaattgaagggcctagaattaggccaac |
5621994 |
T |
|
| Q |
402 |
ctacaaatggatacaattttgtgaggcatatatattacaacctatatgaatctat |
456 |
Q |
| |
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|| || |||||||||||||||| | |||||| ||||||||||||||||||||| |
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| T |
5621993 |
ctgcagatggatacaattttgtcatgcatat---ttacaacctatatgaatctat |
5621942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 5621876 - 5621771
Alignment:
| Q |
459 |
aaaaaacaacatgtaaaagaataacacttactatcattggtgcaataaatgcagggaaatgcaaacgttttacgaagaaattgcagatttgtgtgatagt |
558 |
Q |
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|||||| ||||| |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
5621876 |
aaaaaaaaacatataaaagaatagaacttaccagcattggtgcaataaatgcagggaaatgcaaacgttttaggaagaaattgcatatttgtgtgatagt |
5621777 |
T |
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| Q |
559 |
aaaaat |
564 |
Q |
| |
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|||||| |
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| T |
5621776 |
aaaaat |
5621771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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