View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_6 (Length: 565)
Name: NF7769_low_6
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 295 - 550
Target Start/End: Complemental strand, 5195675 - 5195420
Alignment:
| Q |
295 |
gaggcaccggcatataggacgatatacaacttttgctttgttaaatagatgtcaccagaaggtaaattctaccacaacattgcattagttgttgactgat |
394 |
Q |
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| T |
5195675 |
gaggcactggcatataggacgatatacaacttttgctttgttaaatagatgtcactagaagggaaattctaccacaacattgcattagttgttgactgat |
5195576 |
T |
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| Q |
395 |
atatagaattggaaaaagctcttgcttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagtgcttgaagatatgaagaattttctgta |
494 |
Q |
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| T |
5195575 |
atatagaattggaaaaagctcttacttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagtgcttgaagatatgaagaattttctgta |
5195476 |
T |
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| Q |
495 |
caattgactttgggataaatttacattatgctgcagctttcaaatttgtaatagtt |
550 |
Q |
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| T |
5195475 |
caattgactttgggataaatttacattatgctgcagctttcaaatttgtaatagtt |
5195420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 5195937 - 5195706
Alignment:
| Q |
4 |
agtttggagtttatgtatttctatagcaagatctgcagaactcatttttgttcaactactaattcgtgactaatttctggacactggagtaacaaatttt |
103 |
Q |
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| T |
5195937 |
agtttggagtttatgtatttctatatcaagatctgcagaactcatttttgttcaactactaattcgtgactaatttctggatactggagtaacgaatttt |
5195838 |
T |
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| Q |
104 |
tgtattttaccagttttgatttgattaacttattgcttcatctagtgaattttccctccacgaatttaatttatggatatagcagtgactaattttatct |
203 |
Q |
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| T |
5195837 |
tgtattttaccagttttgatttgattaacttattgcttcatctagtgaatttttcctccacgaatttaatttatggatatagcagtgactaattttatct |
5195738 |
T |
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| Q |
204 |
tttgtttgttatcttcgttgtcttaaatatgt |
235 |
Q |
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| T |
5195737 |
tttgtttgttatcttcgttgtcttaaatatgt |
5195706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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