View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7769_low_9 (Length: 525)
Name: NF7769_low_9
Description: NF7769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7769_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 55028694 - 55028184
Alignment:
| Q |
1 |
ttgaacttgaactagcattgaataacgagaaaataaagctcaccgacaagccacagccacaaatactaagcacagcaagactcgtccaatgatgaccacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028694 |
ttgaacttgaactagcattgaataacgagaaaataaagctcaccgacaagccacagccacaaatactaagcacagcaagactcgtccaatgatgaccacc |
55028595 |
T |
|
| Q |
101 |
accactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatcagtctgttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028594 |
accactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatcagtctgtgac |
55028495 |
T |
|
| Q |
201 |
ccagaattaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcctcttcacgag |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028494 |
ccagaataaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcctcttcacgag |
55028395 |
T |
|
| Q |
301 |
ccgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcctccgatgatga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028394 |
gcgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcctccgatgatga |
55028295 |
T |
|
| Q |
401 |
ccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaagaagctgaagaggatgaggatgaagatgaggctgatgaagaacgggaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028294 |
ccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaggaagctgaagaggatgaggatgaagatgaggctgatgaagaacgggaa |
55028195 |
T |
|
| Q |
501 |
gaggttgatgt |
511 |
Q |
| |
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||||||||||| |
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|
| T |
55028194 |
gaggttgatgt |
55028184 |
T |
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