View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7770_high_1 (Length: 412)
Name: NF7770_high_1
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_high_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 30518769 - 30519180
Alignment:
| Q |
1 |
taaaatgtgttaaaatgttgtattatatacattgcattgtaggtattcctgttactatggaaattgctagtgatttattggatcgggagggaccaatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518769 |
taaaatgtgttaaaatgttgtattatatacattgcattgtaggtattcctgttactatggaaattgctagtgatttattggatcgggagggaccaatata |
30518868 |
T |
|
| Q |
101 |
ccgagaagatacagctgtttttgttagtcaatctggtgaaaccgcagatactttacttgcactgcaatatgctttagacaatggtgcattgtgtgttggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518869 |
ccgagaagatacagctgtttttgttagtcaatctggtgaaaccgcagatactttacttgcactgcaatatgctttagacaatggtgcattgtgtgttggg |
30518968 |
T |
|
| Q |
201 |
ataacaaacaccgttggcagtgcaatagcaaggaacacgcattgcggtgttcatataaatgctggtgctgagattggtgtggcaagtaccaaggtaaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518969 |
ataacaaacaccgttggcagtgcaatagcaaggaacacgcattgcggtgttcatataaatgctggtgctgagattggtgtggcaagtaccaaggtaaatg |
30519068 |
T |
|
| Q |
301 |
ttgtatttaaaggatgtcgctttcttcattttttatatttttctattattgatttaaccaacggccaactcacacatttacaactactataggcatatac |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519069 |
ttgtatttaaaggatgtcattttcttcattttttatatttttctattattgatttaaccaacggccaactcacacatttacaactactataggcatatac |
30519168 |
T |
|
| Q |
401 |
aagtcaaattgt |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30519169 |
aagtcaaattgt |
30519180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University