View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7770_high_2 (Length: 387)
Name: NF7770_high_2
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 24414379 - 24414655
Alignment:
| Q |
18 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatcgaaattcactagtaattctt |
117 |
Q |
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| T |
24414379 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtactactcttaccaatcgaaattcactagtaattatt |
24414478 |
T |
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| Q |
118 |
cttttacaataaaatcttaccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcattagaaaaag |
217 |
Q |
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| T |
24414479 |
tttttacaataaaatcataccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcatcagaaaaag |
24414578 |
T |
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| Q |
218 |
tacaattatttgcaacatgcaatctttgtagcaccgacacttctatttgaaagtgtgtttgatgtccgacactgata |
294 |
Q |
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| T |
24414579 |
tacaattatttgcaacatgcaatctttgtagcaccgacacttctatttgaaaatgtgtttgatgtccgacactgata |
24414655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24419582 - 24419516
Alignment:
| Q |
18 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
84 |
Q |
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| T |
24419582 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
24419516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 24414659 - 24414740
Alignment:
| Q |
271 |
tgtgtttgatgtccgacactgatatgacaacgtcacgtattattacatttaatta-attaattttttcaagttattaatatt |
351 |
Q |
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| T |
24414659 |
tgtgtttgatgtccgacactgatatgacaacgtcacatattattacatttaattattttttttttttcaagttattaatatt |
24414740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 24379322 - 24379401
Alignment:
| Q |
18 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatc |
97 |
Q |
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| T |
24379322 |
cttactggcttattgaccttgccaatgtttgcattatcattcatttggttggaggatatcaggtactactcttaccaatc |
24379401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 24402126 - 24402192
Alignment:
| Q |
18 |
cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact |
84 |
Q |
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| T |
24402126 |
cttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact |
24402192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 3591848 - 3591902
Alignment:
| Q |
245 |
gtagcaccgacacttctatttgaaagtgtgtttgatgtccgacactgatatgaca |
299 |
Q |
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| T |
3591848 |
gtagcaccaacacttcaaattgaaagtgtgtctggtgtccgacactgatatgaca |
3591902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 653722 - 653689
Alignment:
| Q |
309 |
attattacatttaattaattaattttttcaagtt |
342 |
Q |
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| T |
653722 |
attattacattcaattaattaattttttcaagtt |
653689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 42720825 - 42720780
Alignment:
| Q |
244 |
tgtagcaccgacacttctatttgaaagtgtgtttgatgtccgacac |
289 |
Q |
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| T |
42720825 |
tgtagcaccgacacttctaattgaatgtatgtttgatgtccaacac |
42720780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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