View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7770_high_5 (Length: 261)

Name: NF7770_high_5
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7770_high_5
NF7770_high_5
[»] chr1 (11 HSPs)
chr1 (1-236)||(49063562-49063797)
chr1 (15-248)||(49048498-49048731)
chr1 (30-236)||(47840833-47841039)
chr1 (30-236)||(47830749-47830955)
chr1 (30-236)||(2540417-2540623)
chr1 (30-236)||(48004978-48005184)
chr1 (16-248)||(34506425-34506657)
chr1 (39-236)||(49045139-49045337)
chr1 (30-221)||(47826033-47826225)
chr1 (27-238)||(33477297-33477508)
chr1 (30-220)||(33467264-33467453)
[»] chr3 (6 HSPs)
chr3 (15-248)||(9757702-9757935)
chr3 (30-236)||(20959672-20959878)
chr3 (30-229)||(20973582-20973781)
chr3 (25-223)||(9761488-9761686)
chr3 (54-229)||(30496447-30496622)
chr3 (57-229)||(30536834-30537007)
[»] chr2 (4 HSPs)
chr2 (1-238)||(39705667-39705904)
chr2 (30-236)||(11619860-11620066)
chr2 (1-229)||(33238245-33238473)
chr2 (1-229)||(33246166-33246394)
[»] scaffold0121 (2 HSPs)
scaffold0121 (1-238)||(38858-39095)
scaffold0121 (25-222)||(34645-34842)
[»] chr8 (1 HSPs)
chr8 (30-248)||(16776616-16776834)
[»] chr5 (3 HSPs)
chr5 (16-220)||(22700421-22700625)
chr5 (1-223)||(19987998-19988220)
chr5 (30-229)||(22001834-22002033)
[»] chr7 (2 HSPs)
chr7 (83-238)||(22651925-22652080)
chr7 (25-178)||(22650239-22650392)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49063797 - 49063562
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49063797 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 49063698  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49063697 aacatctgcaccacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggtgctttgagaaagtaacttgcaagttgctctcgttgctaatc 49063598  T
Q  201 tttttcatctcgatcttttggcggcctcggcctttc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  49063597 tttttcatctcgatcttttggcggcctcggcctttc 49063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 49048731 - 49048498
Alignment:
Q  15 agagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcac 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49048731 agagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccac 49048632  T
Q  115 aaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgat 214  Q
    ||||||||||||||||||| || ||||||||||| ||| || | |||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||||    
T  49048631 aaagggtgcaaagctcactggctttcttgaagagtccgctacgacgctttgagaaagtcacttgtaggttgctctcgttgctcatctttttcatttcgat 49048532  T
Q  215 cttttggcggcctcggcctttcttctcactcgac 248  Q
    ||||||||| ||||||||||||||  ||||||||    
T  49048531 cttttggcgacctcggcctttctttccactcgac 49048498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 47840833 - 47841039
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| ||||||||||||||| |||||||||||  | | ||||||||| |||||||||||| |||||||| |||| |||||||||||||    
T  47840833 tctatgaccgtatcaacattggggtgaccaaatgaaaataccttctccccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagct 47840932  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    | || || |||||||| |||||  || ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  47840933 cgctggctttcttgaaaagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcg 47841032  T
Q  230 gcctttc 236  Q
    || ||||    
T  47841033 gcttttc 47841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 47830749 - 47830955
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| |||||| || ||||| ||||| |||||  | | |||||||||||||||||||||| |||||||| | || || ||||||||||    
T  47830749 tctatgaccgtatcaacattgggttggccaaatgaaaacaccttctctccaggtgagaatacaacgagagcaacatctgcaccgcagagagtgcaaagct 47830848  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||||||  || ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  47830849 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcg 47830948  T
Q  230 gcctttc 236  Q
    || ||||    
T  47830949 gcttttc 47830955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 2540623 - 2540417
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| |||||| || ||||| |||||||||||  | | ||||||||| | || ||||||| |||||||| |||| || ||||||||||    
T  2540623 tctatgaccgtatcaacattgggttggccaaatgaaaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaagct 2540524  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||||||  || ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  2540523 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcg 2540424  T
Q  230 gcctttc 236  Q
    || ||||    
T  2540423 gcttttc 2540417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 48005184 - 48004978
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||| ||||||| ||||||||| ||||| |||||||||||  | | ||||||| | |||||||||||| |||||||| | || |||||||||||||    
T  48005184 tctatgactgtatcaacattggggtggccaaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgcagagggtgcaaagct 48005085  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||| ||  || ||||||| |||||||| |||||||||| |||||||||||| || ||||| ||||| ||||||||||| |||||    
T  48005084 cactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagtggctctcgttgctcatttttttaatctcaatcttttggcgacctcg 48004985  T
Q  230 gcctttc 236  Q
    || ||||    
T  48004984 gcttttc 48004978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 34506657 - 34506425
Alignment:
Q  16 gagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcaca 115  Q
    |||| ||| |||| ||||||| ||| |||| ||  ||||| ||||| ||||| |||||  |||||||||||||||||| |||||||  || |||| ||||    
T  34506657 gagatagatagcgatctatgatcgtctcaacatctgggtgcccaaatgaaaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccaca 34506558  T
Q  116 aagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatc 215  Q
    |||||||||||||||||| || ||||||||||| ||  || ||||||| |||||||| |||||||| |||||||||||||| || ||||||||||| ||     
T  34506557 aagggtgcaaagctcactagctttcttgaagaggccactacggcgcttcgagaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaatt 34506458  T
Q  216 ttttggcggcctcggcctttcttctcactcgac 248  Q
    |||||||| ||| ||| ||||||  ||||||||    
T  34506457 ttttggcgaccttggcttttctttccactcgac 34506425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 49045337 - 49045139
Alignment:
Q  39 gtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagctcacttgcct 138  Q
    ||||||| ||| || ||||| || |||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||  |||||  | |    
T  49045337 gtatcaacatttggatgaccgaaagaaaataccttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaaattcactgactt 49045238  T
Q  139 tcttgaagagcccgttatggcgctttgagaaagtaacttgcaag-ttgctctcgttgctaatctttttcatctcgatcttttggcggcctcggcctttc 236  Q
    |||||||||||||  || | |||||||||||||| ||||| | | |||||||||||||| |||||||||||||| ||||||||||| || || ||||||    
T  49045237 tcttgaagagcccactacgacgctttgagaaagtcacttgaaggtttgctctcgttgctcatctttttcatctcaatcttttggcgaccacgacctttc 49045139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 47826033 - 47826225
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    ||||||| |||||||| |||||| || ||||| |||||||||||  | | ||||||||| |||||||||||| |||||||| |||| | ||| |||||||    
T  47826033 tctatgagcgtatcaacattgggttggccaaatgaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagatggtacaaagct 47826132  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgct-aatctttttcatctcgatcttttgg 221  Q
    |||| || ||||||||||||||  || ||||||| |||||||| ||||||||||||||||||||||| | | ||||||||||| |||||||||    
T  47826133 cactagctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcattttttttcatctcaatcttttgg 47826225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 33477508 - 33477297
Alignment:
Q  27 cggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaa 126  Q
    |||||||||||||||| || ||  || || ||||| ||||| |||||  |||||||||||||||||| |||||||  || |||| |||||||||||||||    
T  33477508 cggtctatgaccgtataaacatctggatggccaaatgaaaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaa 33477409  T
Q  127 gctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcc 226  Q
    |||| || || ||||||||||| ||  || | ||||| |||||||| |||||||| |||||||||||||| || ||||||||||| || |||||||| ||    
T  33477408 gctcgctggctttcttgaagaggccactacgacgcttcgagaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaattttttggcgacc 33477309  T
Q  227 tcggcctttctt 238  Q
    | | ||||||||    
T  33477308 ttgacctttctt 33477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 33467453 - 33467264
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| ||| ||||||||||| ||||| |||||  |||||||||||||||||| |||||||  || |||| ||||||||||||||||||    
T  33467453 tctatgaccgtatcaacatttgggtgaccaaatgaaaacaccttctcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagct 33467354  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttg 220  Q
    | || || |||||||| || || ||     |||| ||||| || ||||||||||||||||||||||| || ||||||||||| || |||||    
T  33467353 cgctagctttcttgaataggccattgcaatgcttcgagaatgtcacttgcaagttgctctcgttgctcat-tttttcatctcaattttttg 33467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 9757702 - 9757935
Alignment:
Q  15 agagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcac 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  9757702 agagaaagatagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgc 9757801  T
Q  115 aaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgat 214  Q
    |||||||||||||||| || || ||||||||||| ||| || | |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  9757802 aaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgat 9757901  T
Q  215 cttttggcggcctcggcctttcttctcactcgac 248  Q
    ||||||||| ||||||||||||||  ||||||||    
T  9757902 cttttggcgacctcggcctttctttccactcgac 9757935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 20959878 - 20959672
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| ||||||||| |||||||||||||||||  | | ||||||||| |||||||||||| |||||||| |||| |||||||||||||    
T  20959878 tctatgaccgtatcaacattggggtggccaaaggaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagct 20959779  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||| ||  || ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  20959778 cactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcg 20959679  T
Q  230 gcctttc 236  Q
    || ||||    
T  20959678 gcttttc 20959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 20973781 - 20973582
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||  | | ||||||||| |||| ||||||| |||||||| | || |||||||||||||    
T  20973781 tctatgaccgcatcaagattggggtggccaaatgaaaataccttctctccaggtgagaaaacaatgagagcaacatctgcaccgcatagggtgcaaagct 20973682  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||||||  || ||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  20973681 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctaatttttttgatctcaatcttttggcgacctcg 20973582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9761488 - 9761686
Alignment:
Q  25 agcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgca 124  Q
    |||| |||||||  ||||||| ||| || ||||| || ||||||||||||  |||||||||||||||||| |||||| ||||| || |||||||||||||    
T  9761488 agcgatctatgattgtatcaacatttggatgaccgaaagaaaataccttttgactaggtgagaatacaactagagcaacatctacaccacaaagggtgca 9761587  T
Q  125 aagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcg 223  Q
    || ||||||  | ||||||||||||||| || | | |||||||||||| ||||| | ||| ||||||||  | || ||||||||||| |||||||||||    
T  9761588 aaactcactgactttcttgaagagcccgctacgacactttgagaaagtcacttggaggtttctctcgttattcatttttttcatctcaatcttttggcg 9761686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 30496447 - 30496622
Alignment:
Q  54 tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgt 153  Q
    |||||||| |||||||||||  ||||||||||||||| ||  |||| | ||| |||| ||||||||||||||||||| || || ||||||||||| ||      
T  30496447 tgaccaaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaagctcgctagctttcttgaagagtccac 30496546  T
Q  154 tatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||||||||| |||||||| ||||||| |||||| || ||||| ||||||||||||   ||||||||||| |||||    
T  30496547 tatggcgcttcgagaaagtcacttgcaggttgctttcattgctcatctttttcatcataatcttttggcgacctcg 30496622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 30536834 - 30537007
Alignment:
Q  57 ccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttat 156  Q
    ||||| |||||||||||  ||| | ||||||||| ||  |||||| ||| |||  ||||||||||||||||||| || ||  |||||||||||||  |||    
T  30536834 ccaaatgaaaataccttctcaccatgtgagaatataattagagcaacatatgcgccacaaagggtgcaaagctcgctagctatcttgaagagcccactat 30536933  T
Q  157 ggcgctttgagaaagtaacttgcaagttgc-tctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    || ||||  | ||||| |||||||  |||| | || ||||| || ||||||||||  |||| |||||| |||||    
T  30536934 ggagcttcaaaaaagtcacttgcagattgcttttcattgctcatatttttcatcttaatctattggcgacctcg 30537007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39705904 - 39705667
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||    
T  39705904 tttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactagttgagaatacaacgagagc 39705805  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||||||| || | |||||||||||||| ||||||| || |||||||||||| |||    
T  39705804 agcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagcccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatc 39705705  T
Q  201 tttttcatctcgatcttttggcggcctcggcctttctt 238  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  39705704 tttttcatttcgatcttttggcgacctcggcctttctt 39705667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 11620066 - 11619860
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||  | ||||||||||| ||||| |||||| |||||||| |||| |||||||||||||    
T  11620066 tctatgaccgtatcaacattggggtggccaaatgaaaataccttctctctaggtgagaaaacaacaagagcaacatctgcaccacagagggtgcaaagct 11619967  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || || |||||||||||  || ||||||| |||||||| ||||||||||||||||||||| |||| |||||||| || ||||||||||| ||| |    
T  11619966 cactggcttttttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttggtaatttttttcatttcaatcttttggcgaccttg 11619867  T
Q  230 gcctttc 236  Q
    || ||||    
T  11619866 gcttttc 11619860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33238473 - 33238245
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    |||||| |||||| ||||| | | | || ||||||||||| |||| ||| || | |||||| |||||||||||  |||||||||||||||  |  |||||    
T  33238473 tttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagagc 33238374  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    |  || |||| |||||||||| ||||||||||| || ||||||||||||||  || ||||||| |||||||| |||||||||||||| || ||||| |||    
T  33238373 aatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcatc 33238274  T
Q  201 tttttcatctcgatcttttggcggcctcg 229  Q
    ||||||||||| |||||||| || |||||    
T  33238273 tttttcatctcaatcttttgtcgacctcg 33238245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33246394 - 33246166
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    |||||| |||||| ||||| | | | || ||||||||||| |||| ||| || | |||||| |||||||||||  |||||||||||||||  |  |||||    
T  33246394 tttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagagc 33246295  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    |  || |||| |||||||||| ||||||||||| || ||||||||||||||  || ||||||| |||||||| |||||||||||||| || ||||| |||    
T  33246294 aatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcatc 33246195  T
Q  201 tttttcatctcgatcttttggcggcctcg 229  Q
    ||||||||||| || ||||| || |||||    
T  33246194 tttttcatctcaattttttgacgacctcg 33246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39095 - 38858
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    |||||| ||||| ||| |||||| | | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  39095 tttggggtgggacgagggaaagataacagtatatgaccgtatcaagattggggtgaccaaaggaaaatagctttccactaggtgagaatacaacaagagc 38996  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    |||||||||| ||||||||||||||| |||||  || ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||  || |||    
T  38995 agcatctgcaccacaaagggtgcaaatctcaccggctttcttgaagagcccgctacggcactttgagaaagtaacttgcaagttgctctcgtcactcatc 38896  T
Q  201 tttttcatctcgatcttttggcggcctcggcctttctt 238  Q
    ||||||||||||||||||||||| || |||||||||||    
T  38895 tttttcatctcgatcttttggcgaccccggcctttctt 38858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 34842 - 34645
Alignment:
Q  25 agcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgca 124  Q
    |||| ||||| |||||||||| ||| || ||||| || |||||||| ||| |||||||||||||||||||||||||| ||||| || |||||||||||||    
T  34842 agcgatctataaccgtatcaacatttggatgaccgaaagaaaatactttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgca 34743  T
Q  125 aagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggc 222  Q
    ||||||| |  | ||||| ||||| ||  || | |||||||| ||||| ||||| | ||| |||| |||||| |||||||||||||||||||||||||    
T  34742 aagctcattgactttcttaaagagtcccctacgacgctttgacaaagtcacttgaaggttactcttgttgctcatctttttcatctcgatcttttggc 34645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 16776616 - 16776834
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    |||||||||||||||| |||||| || ||||| |||||||||||  | | ||||||||| ||||| |||||| |||||||| |||| || ||||||||||    
T  16776616 tctatgaccgtatcaatattgggttggccaaatgaaaataccttctccccaggtgagaaaacaacaagagcaacatctgcaccacagagagtgcaaagct 16776715  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    |||| || ||||||||||||||  || ||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  16776716 cactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcg 16776815  T
Q  230 gcctttcttctcactcgac 248  Q
    || |||| | |||||||||    
T  16776816 gcttttcctttcactcgac 16776834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 22700421 - 22700625
Alignment:
Q  16 gagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcaca 115  Q
    |||| ||||| || ||||||||||| |||| ||| || | |||||| |||||||||||  ||||||||||||||| ||  ||||||  || |||| ||||    
T  22700421 gagagagaaaacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccaca 22700520  T
Q  116 aagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatc 215  Q
    ||||||||||||||| || || || || ||||||||  || |||||||||||||||| |||||||||||||| || ||||| |||||||||||||| |||    
T  22700521 aagggtgcaaagctcgctagcttttttaaagagcccaatacggcgctttgagaaagtcacttgcaagttgctttcattgctcatctttttcatctcaatc 22700620  T
Q  216 ttttg 220  Q
    |||||    
T  22700621 ttttg 22700625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19988220 - 19987998
Alignment:
Q  1 tttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagc 100  Q
    |||||||||| |  ||||| ||| | || ||||||||||| |||| ||| ||||||||||| ||||| |||||  ||| ||||||||||| ||  |||||    
T  19988220 tttgggttggaaccagagagagataacgatctatgaccgtttcaacatttgggtgaccaaatgaaaagaccttctcaccaggtgagaatataattagagc 19988121  T
Q  101 agcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatc 200  Q
    | ||| |||| |||| |||||||||||||| || || ||||||||||||||  || | ||||| |||||||| ||||| | |||||| || ||||| |||    
T  19988120 aacatatgcaccacacagggtgcaaagctcgctagctttcttgaagagcccactacgacgcttcgagaaagtcacttgaaggttgctttcattgctcatc 19988021  T
Q  201 tttttcatctcgatcttttggcg 223  Q
    ||||||||||| |||||||||||    
T  19988020 tttttcatctcaatcttttggcg 19987998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 22002033 - 22001834
Alignment:
Q  30 tctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagct 129  Q
    ||||||||||| |||| ||| ||||||||||| |||||||||||| |||| |||||||| |  |  |||||| ||| |||| |||||||  |||||||||    
T  22002033 tctatgaccgtttcaacatttgggtgaccaaatgaaaataccttttcacttggtgagaagattattagagcaacatatgcaccacaaagactgcaaagct 22001934  T
Q  130 cacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcg 229  Q
    | || || ||||||||||||||  || ||||||| |||||||| ||||| | | |||| || ||||| |||||||||||||| |||||||| || |||||    
T  22001933 cgctagctttcttgaagagcccactacggcgcttcgagaaagtcacttgtaggctgctttcattgctcatctttttcatctcaatcttttgccgacctcg 22001834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 22652080 - 22651925
Alignment:
Q  83 tgagaatacaacgagagcagcatctgcatcacaaagggtgcaaagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttgcaag 182  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||| |||   |  || |||||||| ||| || | |||||| ||||||| ||||||| |    
T  22652080 tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagttcatcggattttttgaagagtccgctacgacgctttaagaaagttacttgcagg 22651981  T
Q  183 ttgctctcgttgctaatctttttcatctcgatcttttggcggcctcggcctttctt 238  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||    
T  22651980 ttgctctcgttgctcatctttttcatctcgatcatttggcgacctcagcctttctt 22651925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 22650392 - 22650239
Alignment:
Q  25 agcggtctatgaccgtatcaagattggggtgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcatcacaaagggtgca 124  Q
    |||| ||||||||| |||||| ||| || ||||| || ||||||||||||  ||||||||||||||||||||||||| ||||| || |||||||||||||    
T  22650392 agcgatctatgaccatatcaacatttggatgaccgaaagaaaatacctttttactaggtgagaatacaacgagagcaacatctacaccacaaagggtgca 22650293  T
Q  125 aagctcacttgccttcttgaagagcccgttatggcgctttgagaaagtaacttg 178  Q
    ||||||| |  | ||||||||||| ||| || |  ||||| ||||||| |||||    
T  22650292 aagctcattgactttcttgaagagtccgctacgatgctttaagaaagtcacttg 22650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University