View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7770_low_11 (Length: 267)
Name: NF7770_low_11
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 41268589 - 41268838
Alignment:
| Q |
1 |
actatttggcttgatagaacctcaggttctgagtctgatcatcagttacacatgttttctactagttaaatatcattgaaatttaattattatcgttgcn |
100 |
Q |
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| T |
41268589 |
actatttggcttgatagaacctcaggttctgagtctgatcatcagttacacatgttttctactagttaaatatcattgaaatttaattattatcgttgct |
41268688 |
T |
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| Q |
101 |
nnnnnnatggtaaaaacaggaagtggatttaaatcggttcgcccgtttcgatctggctactttggtgcttccattaagcttcaacctggttatactgcag |
200 |
Q |
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| T |
41268689 |
ttttttatggtaaaagcaggaagtggatttaaatcggttcgcccgtttcgatctggctactttggtgcttccattaagcttcaacctggttatactgcag |
41268788 |
T |
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| Q |
201 |
gagttataacatctttctatgtaagatgttacaacgtgacatgcatgttt |
250 |
Q |
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| T |
41268789 |
gagttataacatctttctatgtaagatgttacaacatgacatgcatgttt |
41268838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 27685877 - 27685768
Alignment:
| Q |
118 |
aggaagtggatttaaatcggttcgcccgtttcgatctggctactttggtgcttccattaagcttcaacctggttatactgcaggagttataacatctttc |
217 |
Q |
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| T |
27685877 |
aggaagtggattcaagtcgaatcgtccatttcgatcgggatactttggcgcttcgattaagcttcatcctggctacactgcaggagttataacagctttt |
27685778 |
T |
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| Q |
218 |
tatgtaagat |
227 |
Q |
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| T |
27685777 |
tatgtaagat |
27685768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 21085456 - 21085392
Alignment:
| Q |
158 |
tactttggtgcttccattaagcttcaacctggttatactgcaggagttataacatctttctatgt |
222 |
Q |
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|||||||||||| | ||||||||||| ||||| |||||||| |||||||| || ||| ||||||| |
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| T |
21085456 |
tactttggtgctgcaattaagcttcatcctggctatactgctggagttattacttctctctatgt |
21085392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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