View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7770_low_15 (Length: 247)

Name: NF7770_low_15
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7770_low_15
NF7770_low_15
[»] chr7 (29 HSPs)
chr7 (33-234)||(34195993-34196192)
chr7 (37-234)||(34194526-34194722)
chr7 (33-234)||(7369279-7369479)
chr7 (33-234)||(23765151-23765345)
chr7 (33-234)||(16439478-16439676)
chr7 (33-234)||(30241560-30241753)
chr7 (33-234)||(16036807-16037000)
chr7 (33-234)||(16051534-16051727)
chr7 (33-234)||(10839242-10839442)
chr7 (33-154)||(16454416-16454535)
chr7 (33-234)||(15854149-15854343)
chr7 (67-118)||(10851967-10852018)
chr7 (67-118)||(15004627-15004678)
chr7 (68-118)||(13895182-13895232)
chr7 (45-154)||(4055413-4055520)
chr7 (33-113)||(2150173-2150253)
chr7 (33-113)||(2165384-2165464)
chr7 (33-113)||(10921327-10921407)
chr7 (33-113)||(16498472-16498552)
chr7 (33-113)||(16507779-16507859)
chr7 (33-113)||(16522883-16522963)
chr7 (67-113)||(4186467-4186514)
chr7 (33-113)||(11414248-11414330)
chr7 (33-113)||(11429231-11429313)
chr7 (33-113)||(18627147-18627229)
chr7 (33-113)||(48217306-48217388)
chr7 (165-234)||(10851862-10851926)
chr7 (165-234)||(13895274-13895338)
chr7 (165-234)||(15004721-15004785)
[»] chr8 (12 HSPs)
chr8 (33-234)||(28503709-28503910)
chr8 (67-121)||(15018187-15018240)
chr8 (67-118)||(11342453-11342504)
chr8 (33-113)||(21337116-21337198)
chr8 (33-113)||(21377077-21377159)
chr8 (67-118)||(21965645-21965695)
chr8 (67-118)||(22070706-22070756)
chr8 (163-234)||(15018084-15018150)
chr8 (33-113)||(15324594-15324676)
chr8 (33-113)||(15504963-15505045)
chr8 (33-113)||(28263110-28263192)
chr8 (165-234)||(11342547-11342611)
[»] scaffold0393 (1 HSPs)
scaffold0393 (33-234)||(7107-7305)
[»] chr6 (22 HSPs)
chr6 (33-234)||(12963701-12963901)
chr6 (33-234)||(14854637-14854834)
chr6 (33-234)||(28197042-28197240)
chr6 (33-213)||(4112551-4112728)
chr6 (33-234)||(17028999-17029192)
chr6 (33-234)||(25179533-25179730)
chr6 (33-116)||(12048061-12048144)
chr6 (45-213)||(24376771-24376940)
chr6 (67-121)||(924410-924463)
chr6 (67-121)||(8765531-8765584)
chr6 (176-234)||(12048198-12048256)
chr6 (33-119)||(20134664-20134749)
chr6 (67-121)||(20424652-20424705)
chr6 (33-119)||(22198120-22198205)
chr6 (168-234)||(17086728-17086790)
chr6 (165-231)||(30720731-30720793)
chr6 (33-113)||(3043683-3043763)
chr6 (67-113)||(12621561-12621608)
chr6 (163-234)||(924307-924373)
chr6 (67-116)||(17086630-17086678)
chr6 (165-234)||(20156257-20156321)
chr6 (165-234)||(22176511-22176575)
[»] chr5 (34 HSPs)
chr5 (33-234)||(28898247-28898446)
chr5 (33-234)||(28934642-28934841)
chr5 (33-234)||(30465600-30465794)
chr5 (33-234)||(22898991-22899185)
chr5 (33-234)||(24612126-24612323)
chr5 (33-234)||(24671752-24671949)
chr5 (33-234)||(24708528-24708725)
chr5 (33-234)||(24741522-24741719)
chr5 (33-234)||(24754291-24754488)
chr5 (33-234)||(22268728-22268924)
chr5 (33-154)||(20579991-20580112)
chr5 (165-234)||(25195591-25195656)
chr5 (165-234)||(25210953-25211018)
chr5 (165-234)||(25275105-25275170)
chr5 (67-121)||(19863750-19863803)
chr5 (67-121)||(21501341-21501394)
chr5 (67-121)||(37294690-37294743)
chr5 (165-211)||(27285673-27285719)
chr5 (33-113)||(24947715-24947795)
chr5 (33-113)||(24980580-24980660)
chr5 (33-113)||(7816250-7816331)
chr5 (67-113)||(20193558-20193605)
chr5 (67-113)||(24692671-24692718)
chr5 (67-113)||(3944051-3944097)
chr5 (33-110)||(23887824-23887901)
chr5 (67-121)||(25195700-25195754)
chr5 (67-121)||(25211062-25211116)
chr5 (67-121)||(25275214-25275268)
chr5 (62-116)||(37750718-37750772)
chr5 (62-116)||(37765963-37766017)
chr5 (168-233)||(11545867-11545927)
chr5 (168-233)||(11559926-11559986)
chr5 (173-234)||(21501238-21501295)
chr5 (70-121)||(27285577-27285629)
[»] chr1 (25 HSPs)
chr1 (33-234)||(16663085-16663284)
chr1 (33-234)||(31447472-31447673)
chr1 (33-234)||(20362131-20362327)
chr1 (33-234)||(20548584-20548780)
chr1 (33-234)||(16197533-16197726)
chr1 (33-234)||(16212542-16212735)
chr1 (33-213)||(16405779-16405956)
chr1 (33-213)||(20329663-20329842)
chr1 (33-213)||(21730497-21730674)
chr1 (33-116)||(20343207-20343289)
chr1 (33-115)||(21731625-21731705)
chr1 (65-234)||(9192799-9192966)
chr1 (67-121)||(15816247-15816300)
chr1 (67-121)||(16230789-16230842)
chr1 (167-213)||(20343340-20343386)
chr1 (33-113)||(18293713-18293793)
chr1 (33-113)||(21481687-21481767)
chr1 (33-113)||(21886840-21886920)
chr1 (33-113)||(26798232-26798312)
chr1 (33-113)||(5137884-5137965)
chr1 (67-118)||(15434317-15434367)
chr1 (163-234)||(16230686-16230752)
chr1 (67-113)||(4147307-4147355)
chr1 (33-113)||(21505913-21505993)
chr1 (173-234)||(20456589-20456645)
[»] chr4 (33 HSPs)
chr4 (33-234)||(15387264-15387460)
chr4 (33-234)||(17241694-17241894)
chr4 (33-234)||(17095017-17095221)
chr4 (33-213)||(15238290-15238467)
chr4 (33-213)||(1662980-1663157)
chr4 (33-234)||(15219517-15219711)
chr4 (33-234)||(1895775-1895971)
chr4 (33-213)||(26406791-26406971)
chr4 (33-234)||(14239874-14240072)
chr4 (33-121)||(12785711-12785798)
chr4 (33-116)||(26461251-26461332)
chr4 (67-234)||(16244909-16245068)
chr4 (67-118)||(15269018-15269069)
chr4 (67-118)||(15299360-15299411)
chr4 (166-234)||(17087052-17087116)
chr4 (67-121)||(18465086-18465139)
chr4 (67-121)||(20757406-20757459)
chr4 (67-121)||(20763797-20763850)
chr4 (35-113)||(19639425-19639504)
chr4 (67-121)||(16281253-16281306)
chr4 (33-113)||(5199797-5199877)
chr4 (33-113)||(22727385-22727465)
chr4 (165-234)||(12785602-12785667)
chr4 (67-113)||(14675685-14675732)
chr4 (67-118)||(15395929-15395979)
chr4 (67-118)||(15399854-15399904)
chr4 (33-113)||(18044107-18044188)
chr4 (67-121)||(17087158-17087211)
chr4 (167-234)||(26461380-26461443)
chr4 (62-116)||(27167942-27167996)
chr4 (33-113)||(13441239-13441319)
chr4 (34-113)||(14657251-14657330)
chr4 (165-234)||(15269112-15269176)
[»] chr3 (28 HSPs)
chr3 (33-234)||(28165931-28166135)
chr3 (33-234)||(17787796-17787989)
chr3 (33-234)||(19089317-19089510)
chr3 (33-234)||(15363956-15364150)
chr3 (33-234)||(18525835-18526030)
chr3 (33-234)||(23011703-23011897)
chr3 (33-234)||(14141628-14141825)
chr3 (45-217)||(11646905-11647073)
chr3 (33-213)||(19627717-19627896)
chr3 (35-212)||(4654099-4654269)
chr3 (67-121)||(10929771-10929824)
chr3 (67-121)||(15475832-15475885)
chr3 (67-121)||(29942720-29942773)
chr3 (67-121)||(29991874-29991927)
chr3 (67-121)||(15371629-15371682)
chr3 (67-121)||(16614797-16614851)
chr3 (67-121)||(16631120-16631174)
chr3 (67-121)||(22052009-22052063)
chr3 (33-113)||(4883065-4883145)
chr3 (33-113)||(8278957-8279037)
chr3 (33-113)||(8307767-8307847)
chr3 (33-113)||(22641414-22641494)
chr3 (167-211)||(19704917-19704961)
chr3 (67-113)||(10600818-10600865)
chr3 (67-113)||(15882177-15882224)
chr3 (67-113)||(18046823-18046870)
chr3 (67-113)||(18062886-18062933)
chr3 (67-121)||(36131310-36131363)
[»] chr2 (15 HSPs)
chr2 (33-234)||(10115408-10115607)
chr2 (33-234)||(18085747-18085943)
chr2 (33-234)||(21692953-21693146)
chr2 (33-234)||(21707735-21707928)
chr2 (33-234)||(17260195-17260392)
chr2 (67-118)||(19446190-19446241)
chr2 (67-118)||(19460999-19461050)
chr2 (33-113)||(12651136-12651216)
chr2 (33-113)||(12666057-12666137)
chr2 (33-113)||(28269311-28269391)
chr2 (67-118)||(19556451-19556501)
chr2 (67-113)||(20831694-20831741)
chr2 (67-118)||(27388597-27388647)
chr2 (67-118)||(27399658-27399708)
chr2 (67-121)||(22700173-22700226)
[»] scaffold0055 (1 HSPs)
scaffold0055 (33-234)||(7298-7491)
[»] scaffold0052 (1 HSPs)
scaffold0052 (33-234)||(77044-77237)
[»] scaffold0021 (2 HSPs)
scaffold0021 (33-234)||(99209-99402)
scaffold0021 (33-234)||(180132-180325)
[»] scaffold0954 (1 HSPs)
scaffold0954 (33-234)||(2811-3005)
[»] scaffold0134 (1 HSPs)
scaffold0134 (33-234)||(23406-23600)
[»] scaffold0031 (1 HSPs)
scaffold0031 (33-234)||(126034-126235)
[»] scaffold0143 (1 HSPs)
scaffold0143 (33-234)||(22763-22963)
[»] scaffold0322 (1 HSPs)
scaffold0322 (33-234)||(17520-17713)
[»] scaffold0184 (1 HSPs)
scaffold0184 (33-234)||(22665-22859)
[»] scaffold0078 (1 HSPs)
scaffold0078 (33-234)||(49985-50179)
[»] scaffold0260 (2 HSPs)
scaffold0260 (33-116)||(5530-5612)
scaffold0260 (167-213)||(5663-5709)
[»] scaffold0609 (2 HSPs)
scaffold0609 (39-121)||(1376-1457)
scaffold0609 (167-234)||(1500-1564)
[»] scaffold0092 (1 HSPs)
scaffold0092 (33-234)||(17455-17650)
[»] scaffold0211 (1 HSPs)
scaffold0211 (67-121)||(10963-11016)
[»] scaffold0109 (4 HSPs)
scaffold0109 (33-118)||(17177-17261)
scaffold0109 (33-118)||(31421-31505)
scaffold0109 (165-234)||(17069-17133)
scaffold0109 (165-234)||(31313-31377)
[»] scaffold0389 (2 HSPs)
scaffold0389 (70-121)||(15236-15286)
scaffold0389 (163-232)||(15323-15387)
[»] scaffold0206 (2 HSPs)
scaffold0206 (67-121)||(12672-12727)
scaffold0206 (167-211)||(12577-12621)
[»] scaffold0231 (1 HSPs)
scaffold0231 (33-113)||(26228-26308)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-113)||(72668-72748)
[»] scaffold0174 (1 HSPs)
scaffold0174 (67-118)||(8497-8547)
[»] scaffold0089 (1 HSPs)
scaffold0089 (67-113)||(11382-11429)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 34195993 - 34196192
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  34195993 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aaaaatttca 34196091  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34196092 agtgatggaatttgcttatttt-aaaaaaagaatatttttctaagtatcgtgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 34196190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 34194722 - 34194526
Alignment:
Q  37 agttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||||||    
T  34194722 agttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-atttttttcaagtg 34194624  T
Q  137 atggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||||||||||||||        || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34194623 atggaatttgcttattttaaaaaaaagagtatttttctaagtatcgcgttccctaagcatacatctaaaccggtaaatcatcatacaacgtgtgtgcg 34194526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 7369479 - 7369279
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||         ||    
T  7369479 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatta-gaaaaaaaatttca 7369381  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7369380 agtgatggaatttgcttattttggaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacgtgtgtg 7369281  T
Q  233 cg 234  Q
    ||    
T  7369280 cg 7369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 23765345 - 23765151
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  23765345 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aaattttca 23765248  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  23765247 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 23765153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 16439478 - 16439676
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  16439478 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-agaattttca 16439575  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | || |||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  16439576 agtgatggaatttgcttattttggaaaattg-atgtttttctaagtatcgcgtttcctcagcatacatctaaagcggtaaatcaacatacaacgtgtgtg 16439674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 30241560 - 30241753
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  30241560 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aaaatttca 30241656  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||| ||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  30241657 agtgatggaatttgcttattttggaaaattg-atatttttctaagtgtcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 30241751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 16037000 - 16036807
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||         ||    
T  16037000 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--aaaatttca 16036904  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||    
T  16036903 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtg 16036809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 16051727 - 16051534
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||         ||    
T  16051727 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--aaaatttca 16051631  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||    
T  16051630 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtg 16051536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 10839242 - 10839442
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | ||         ||    
T  10839242 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaa--aaattttca 10839339  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||| || || | ||||        ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  10839340 agtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 10839439  T
Q  232 gcg 234  Q
    |||    
T  10839440 gcg 10839442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 16454416 - 16454535
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  16454416 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-agaattttca 16454513  T
Q  133 agtgatggaatttgcttatttt 154  Q
    ||||||||||||||||||||||    
T  16454514 agtgatggaatttgcttatttt 16454535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 15854343 - 15854149
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         ||    
T  15854343 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaa--aaattttca 15854248  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||| ||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  15854247 agtgatagaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 15854152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 10852018 - 10851967
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  10852018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 10851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15004627 - 15004678
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15004627 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15004678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 13895182 - 13895232
Alignment:
Q  68 taagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  13895182 taagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 13895232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 4055520 - 4055413
Alignment:
Q  45 ttagagttcatttgagtttttcttaagaaaataaaggg-aaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaat 143  Q
    |||||||||||||||||||   |||||||||||||||| |||| |||||||||||| |||||||| |||| || ||||         |||||||||||||    
T  4055520 ttagagttcatttgagtttga-ttaagaaaataaagggaaaaaatcaatggagttttgactccaaagtttgtttggaa--aaattttcaagtgatggaat 4055424  T
Q  144 ttgcttatttt 154  Q
    |||||||||||    
T  4055423 ttgcttatttt 4055413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 2150253 - 2150173
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  2150253 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 2150173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 2165464 - 2165384
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  2165464 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 2165384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 10921327 - 10921407
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  10921327 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 10921407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 16498472 - 16498552
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16498472 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16498552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 16507779 - 16507859
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16507779 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16507859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 16522883 - 16522963
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16522883 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16522963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 4186514 - 4186467
Alignment:
Q  67 ttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  4186514 ttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 4186467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 11414248 - 11414330
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  11414248 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 11414330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 11429231 - 11429313
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  11429231 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 11429313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 18627229 - 18627147
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  18627229 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggttt 18627147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 48217388 - 48217306
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  48217388 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggttt 48217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 10851926 - 10851862
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  10851926 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 10851862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 13895274 - 13895338
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  13895274 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 13895338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 15004721 - 15004785
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  15004721 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 15004785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 28503709 - 28503910
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg-aannnnnnnnnc 131  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||         |    
T  28503709 tctaagttggaattagagttgatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaaaaaaaatttc 28503808  T
Q  132 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503809 aagtgatggaatttgcttatttt-aaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 28503907  T
Q  232 gcg 234  Q
    |||    
T  28503908 gcg 28503910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 15018240 - 15018187
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15018240 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15018187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 11342453 - 11342504
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| |||||| || | ||||||||||||||||||    
T  11342453 ttaagaaaataaagggaaaatacaatggggtgttgactccaaggtttattag 11342504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 21337116 - 21337198
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  21337116 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggttt 21337198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 21377077 - 21377159
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  21377077 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggttt 21377159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 21965695 - 21965645
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  21965695 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 21965645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 22070706 - 22070756
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  22070706 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 22070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 15018150 - 15018084
Alignment:
Q  163 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  15018150 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 15018084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 15324676 - 15324594
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| |||||||||||||    
T  15324676 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggttt 15324594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 15505045 - 15504963
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| |||||||||||||    
T  15505045 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggttt 15504963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 28263192 - 28263110
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  28263192 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 28263110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 11342547 - 11342611
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  11342547 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 11342611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 7305 - 7107
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  7305 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aaattttca 7208  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7207 agtgatggaatttgcttatttt-aaaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 7109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 12963701 - 12963901
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg--aannnnnnnnn 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  ||             
T  12963701 tctaagttggaattagagttcatttgagtttttcttaagaaaatgaagggaaaattcaatggagtttcgactccaagctttattatgaaaaaaaataatt 12963800  T
Q  131 caagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12963801 caagtgatggaatttgcttattt---aaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 12963897  T
Q  231 tgcg 234  Q
    ||||    
T  12963898 tgcg 12963901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 14854834 - 14854637
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  14854834 tctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aaaatttca 14854737  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||| || |||        | || |||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||||    
T  14854736 agtgatggaatttgc-tagtttttgaaaatgtat-tttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtg 14854639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 28197042 - 28197240
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||| ||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||| || |||||||||||||||||||||         ||    
T  28197042 tctacgttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattctatggagctttgactccaaggtttattaggaa-atttttttca 28197139  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  28197140 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgttccctaagcatacatctaagacagtaaatcaacatacaacgtgtgtg 28197238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 4112551 - 4112728
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||         ||    
T  4112551 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--aaattttca 4112648  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||||||  ||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  4112649 agtgatggaatttgctagttttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 4112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 17028999 - 17029192
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||         ||    
T  17028999 tctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattaggaa-ttttttttca 17029096  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        |  |||||| |||||||||| ||||||||||||| |||||||  |||||||    |||||||||||||||    
T  17029097 agtgatggaatttgcttattttttgaaaatg--tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgtg 17029190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 25179730 - 25179533
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  25179730 tctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-aaaaatttca 25179633  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||    
T  25179632 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtg 25179537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 12048061 - 12048144
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    ||||||||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12048061 tctaagttggaattaaagttcatttaaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttatt 12048144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 24376940 - 24376771
Alignment:
Q  45 ttagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatt 144  Q
    |||||||||||| | |||||  |||||||||||||| |||||||||||||||||| |||||||||||||||| | ||          |||||||||||||    
T  24376940 ttagagttcattggggttttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttgaaaaaatttta--aagtgatggaatt 24376843  T
Q  145 tgcttattttnnnnnnnnga---atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||| ||||         |   ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24376842 tgcttgttttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 24376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 924463 - 924410
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  924463 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 924410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 8765584 - 8765531
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8765584 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 8765531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 12048198 - 12048256
Alignment:
Q  176 agtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||||||||||||| ||| |||||||  |||||||||| |||||||||||||||||    
T  12048198 agtatcgcgttccctaaacatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 12048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 20134749 - 20134664
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 119  Q
    ||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  20134749 tctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 20134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 20424705 - 20424652
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20424705 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20424652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 22198120 - 22198205
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 119  Q
    ||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  22198120 tctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 22198205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 17086728 - 17086790
Alignment:
Q  168 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17086728 ttttcttaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17086790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 30720731 - 30720793
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    ||||||||||||||    
T  30720731 atatttttctaagtatcgcgtttcctaagcatacatctaaggcggtaaa----catacaacgtgtgt 30720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 3043763 - 3043683
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  3043763 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 3043683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 12621608 - 12621561
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12621608 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12621561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 924373 - 924307
Alignment:
Q  163 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  924373 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 17086630 - 17086678
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||||||||||    
T  17086630 ttaagaaaataaaag-aaaatacaatggagttttgactccaaggtttatt 17086678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 20156321 - 20156257
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20156321 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20156257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 22176511 - 22176575
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  22176511 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 22176575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 28898247 - 28898446
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||         ||    
T  28898247 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aaaaatttca 28898344  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    |||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28898345 agtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 28898444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 28934642 - 28934841
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||         ||    
T  28934642 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aaaaatttca 28934739  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    |||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934740 agtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 28934839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 30465600 - 30465794
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  30465600 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-atttttttca 30465697  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  30465698 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 30465792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 22899185 - 22898991
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  22899185 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aaaaatttca 22899088  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||| ||| ||||||||||||||||||||||||||    |||||||||||||||    
T  22899087 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgtgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 22898993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 24612126 - 24612323
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||         ||    
T  24612126 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aaaaatttca 24612223  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24612224 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24612319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 24671752 - 24671949
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||         ||    
T  24671752 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aaaaatttca 24671849  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24671850 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24671945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 24708528 - 24708725
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||         ||    
T  24708528 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aaaaatttca 24708625  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24708626 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24708721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 24741522 - 24741719
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||         ||    
T  24741522 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aaaaatttca 24741619  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24741620 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 24754291 - 24754488
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||         ||    
T  24754291 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aaaaatttca 24754388  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  24754389 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 24754484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 22268728 - 22268924
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  ||| || ||||||||||| |||||||||||||||| ||||         ||    
T  22268728 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaagatgcaatggagttttgactccaaggtttatttggaa--aaattttca 22268823  T
Q  133 agtgatggaatttgcttattttnnnnnnnnga---atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 229  Q
    ||||||||||||||||||||||         |   | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||    
T  22268824 agtgatggaatttgcttattttttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgt 22268919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 20579991 - 20580112
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaannnnnnnn 129  Q
    ||||||||||||||||| |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||||| ||||            
T  20579991 tctaagttggaattagaattcatttg-gatttgattaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggtttatttggaa--aaaatt 20580087  T
Q  130 ncaagtgatggaatttgcttatttt 154  Q
     ||||||||||||||||||||||||    
T  20580088 tcaagtgatggaatttgcttatttt 20580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 25195656 - 25195591
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25195656 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25195591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 25211018 - 25210953
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25211018 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 25275170 - 25275105
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25275170 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 19863750 - 19863803
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  19863750 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 19863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 21501394 - 21501341
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  21501394 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 21501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 37294690 - 37294743
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  37294690 ttaagaaaataaagggaaa-tacaatggagttttgactccaaggtttattaggaa 37294743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 27285673 - 27285719
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggta 211  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  27285673 atatttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 27285719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 24947795 - 24947715
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24947795 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24947715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 24980660 - 24980580
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24980660 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24980580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 7816331 - 7816250
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  7816331 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 7816250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 20193558 - 20193605
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  20193558 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 20193605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 24692671 - 24692718
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24692671 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24692718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 3944097 - 3944051
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||  |||| |||||||||||| |||||||||||||    
T  3944097 ttaagaaaataaagaaaaaagtcaatggagttttgactccaaggttt 3944051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 23887901 - 23887824
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaagg 110  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| ||||||||||    
T  23887901 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaagg 23887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 25195754 - 25195700
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25195754 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 25211116 - 25211062
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25211116 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25211062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 25275268 - 25275214
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25275268 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25275214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 37750772 - 37750718
Alignment:
Q  62 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37750772 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37750718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 37766017 - 37765963
Alignment:
Q  62 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37766017 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37765963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 11545927 - 11545867
Alignment:
Q  168 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 233  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11545927 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 11559986 - 11559926
Alignment:
Q  168 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 233  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11559986 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11559926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21501295 - 21501238
Alignment:
Q  173 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  21501295 ctaagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 21501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 27285577 - 27285629
Alignment:
Q  70 agaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  27285577 agaaaataaagagaaaaattcaatggagttttgactccatggtttatttggaa 27285629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 16663085 - 16663284
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||         ||    
T  16663085 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aaaaatttca 16663182  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    |||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663183 agtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 16663282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 31447472 - 31447673
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttt-tcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 131  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||         |    
T  31447472 tctaagttggaattagagttcatttgagttttttcttaagaaaataaagggaaaattcaatggagttttgactccaaagtttattaggaa-aaaattttc 31447570  T
Q  132 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  31447571 aagtgatggaatttgcttattttggaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacgtgtgt 31447670  T
Q  232 gcg 234  Q
    |||    
T  31447671 gcg 31447673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 20362131 - 20362327
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||         ||    
T  20362131 tctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--aaattttca 20362228  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    ||||||||||||||||| ||||        ||||| |||| |||||| | | ||||||||| ||||||||||||||||||||    ||||||||||||||    
T  20362229 agtgatggaatttgcttgtttttggaaaatgaatattttttctaagtttggtgttccctaaacatacatctaaagcggtaaa----catacaacgtgtgt 20362324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 20548780 - 20548584
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||         ||    
T  20548780 tctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--aaattttca 20548683  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    ||||||||||||||||| ||||        ||||| |||| |||||| | | ||||||||| ||||||||||||||||||||    ||||||||||||||    
T  20548682 agtgatggaatttgcttgtttttggaaaatgaatattttttctaagtttggtgttccctaaacatacatctaaagcggtaaa----catacaacgtgtgt 20548587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 16197533 - 16197726
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         ||    
T  16197533 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaa--aaaatttca 16197628  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||          ||||||| |||||||||||||| |||||||||||||||||||||||| |    |||||||||||||||    
T  16197629 agtgatggaatttgcttatttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtata----catacaacgtgtgtg 16197724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 16212542 - 16212735
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         ||    
T  16212542 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaa--aaaatttca 16212637  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||          ||||||| ||||||||||| || |||||||||||||||||||||||| |    |||||||||||||||    
T  16212638 agtgatggaatttgcttatttttggaaaattgatatttttctaagtatcgcatttcctaagcatacatctaaagcggtata----catacaacgtgtgtg 16212733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 16405956 - 16405779
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  16405956 tctaagttggaattagagttcatttg-gatttgattaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 16405860  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||||||||||||            ||||| ||||||||||| || ||||| ||||||||||||||||||||    
T  16405859 agtgatggaatttgcttatttttggaaaattggcatttttctaagtatcgcatttcctaaacatacatctaaagcggtaaa 16405779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 20329663 - 20329842
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||         ||    
T  20329663 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa--aaaatttca 20329759  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaat----attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||||||||||||         |||    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20329760 agtgatggaatttgcttatttttttggaa--aattggcatttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 21730674 - 21730497
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         ||    
T  21730674 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaa--aaaatttca 21730579  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    |||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21730578 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 21730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 20343207 - 20343289
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  20343207 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 20343289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 21731705 - 21731625
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttat 115  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  21731705 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttat 21731625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 9192799 - 9192966
Alignment:
Q  65 tcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatttgcttattttnnnnnnnnga 164  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||  |||         ||||||||||||||||| || |||        ||    
T  9192799 tcttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttatttagaa--aaattttcaagtgatggaatttgc-tagttttggaaaatga 9192895  T
Q  165 ata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||| |||| |||||||||||||||||||| ||| |||||||   ||||||||| |||||| ||||||||||    
T  9192896 atattttttctaagtatcgcgttccctaaacatgcatctaagatggtaaatcaacatacaccgtgtgtgcg 9192966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 15816247 - 15816300
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15816247 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15816300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 16230842 - 16230789
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  16230842 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 16230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 20343340 - 20343386
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20343340 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20343386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 18293793 - 18293713
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18293793 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18293713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 21481767 - 21481687
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  21481767 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 21481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 21886840 - 21886920
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  21886840 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 21886920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 26798312 - 26798232
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  26798312 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 26798232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 5137965 - 5137884
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  5137965 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 5137884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 15434367 - 15434317
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15434367 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15434317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16230752 - 16230686
Alignment:
Q  163 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  16230752 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 16230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 4147307 - 4147355
Alignment:
Q  67 ttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  4147307 ttaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 4147355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 21505993 - 21505913
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | | |||||||||||||| |||||||||||||    
T  21505993 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaatatattcaatggagttttgactccaaggttt 21505913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 20456645 - 20456589
Alignment:
Q  173 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20456645 ctaagtatcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20456589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 15387460 - 15387264
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||         ||    
T  15387460 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttattaggaaaaaaattt-ca 15387362  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15387361 agtgatggaatttgcttatt----aaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 15387266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17241894 - 17241694
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  17241894 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aaaattttca 17241796  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  17241795 agtgatggaatttccttattttgaaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacgtgtgtg 17241696  T
Q  233 cg 234  Q
    ||    
T  17241695 cg 17241694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17095221 - 17095017
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt----aggaannnnnnn 128  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||           
T  17095221 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaagaaaaaaaaaa 17095123  T
Q  129 nncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtg 228  Q
      ||||||||||||||| | ||||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  17095122 ttcaagtgatggaatttacctatttttagaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacgtg 17095023  T
Q  229 tgtgcg 234  Q
    ||||||    
T  17095022 tgtgcg 17095017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 15238467 - 15238290
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||         ||    
T  15238467 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aaaaatttca 15238370  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15238369 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 15238290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 1663157 - 1662980
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| ||||         ||    
T  1663157 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 1663061  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||||||| ||||         | |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1663060 agtgatggaatttgcttgttttgaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 1662980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 15219711 - 15219517
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||         ||    
T  15219711 tctaagttggaattagagttcatttaagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aaaaatttca 15219614  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||| ||| ||||||||||||||||||||||||||    |||||||||||||||    
T  15219613 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgtgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 15219519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 1895971 - 1895775
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||         ||    
T  1895971 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--aaaatttca 1895875  T
Q  133 agtgatggaatttgct--tattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||||||  | ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  1895874 agtgatggaatttgcttgtttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 1895779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 26406791 - 26406971
Alignment:
Q  33 tctaagttggaattaga-gttcatttgagtttttcttaagaaaataaaggg-aaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnn 130  Q
    ||||||||||||||||| |||| |||||||||   ||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||             
T  26406791 tctaagttggaattagaagttcgtttgagtttga-ttaagaaaataaaaggtaaaattcaatggagttttgactccaaggtttatttggaa--aaaattt 26406887  T
Q  131 caagtgatggaatttgcttattttnnnnnnnnga-atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||||||||||||||        || || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26406888 caagtgatggaatttgcttattttggaaaattgatattttttcctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 26406971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 14239874 - 14240072
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||  |||||||||| |||  |||||||||||||||||||||| ||||||||||| | |||||||||||||| | ||         ||    
T  14239874 tctaagttggaattat-gttcatttgaatttg-cttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttattggaaaaaaattt--ca 14239969  T
Q  133 agtgatggaatttgcttattttnnnnnnnn-gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||| ||||| |||||         ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  14239970 agtgatggaacttgctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 14240069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 12785798 - 12785711
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||||||||| ||||||||| |||||| ||||    
T  12785798 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaagttcaatggagtttggactccaagatttatttggaa 12785711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 26461251 - 26461332
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    |||||||||| |||||||||  ||||||||||| ||||||||||||||||  ||| ||||||||||| ||||||||||||||||    
T  26461251 tctaagttgggattagagtttgtttgagtttttattaagaaaataaaggg--aatacaatggagttttgactccaaggtttatt 26461332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 16244909 - 16245068
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatttgcttattttnnnnnnnngaat 166  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| ||||         ||| ||||||||||||||| ||||        || |    
T  16244909 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttatttggaaaaaattt--caaatgatggaatttgcttgttttggaaaattga-t 16245004  T
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||||||    
T  16245005 attttcctaagtatcgcgcttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 16245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15269018 - 15269069
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15269018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15269069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15299360 - 15299411
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15299360 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 17087116 - 17087052
Alignment:
Q  166 tattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17087116 tatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17087052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 18465086 - 18465139
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  18465086 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 18465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 20757459 - 20757406
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20757459 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 20763850 - 20763797
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20763850 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20763797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 19639425 - 19639504
Alignment:
Q  35 taagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 113  Q
    ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  19639425 taagtaggaattaggattcatttgggatttggttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 19639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 16281306 - 16281253
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  16281306 ttaagaaaataaagg-aaaatacaatggagctttgactccaaggtttattaggaa 16281253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 5199797 - 5199877
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  5199797 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 5199877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 22727385 - 22727465
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  22727385 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 22727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 12785667 - 12785602
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||| |||| |||| | ||||||||||||||||||||||||    |||||||||||||||||    
T  12785667 atatttttctaaatatcacgtttcttaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 12785602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 14675732 - 14675685
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  14675732 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 14675685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15395929 - 15395979
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15395929 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15395979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15399854 - 15399904
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15399854 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 18044188 - 18044107
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||| ||||||  ||||||||||||| |||||||||||||    
T  18044188 tctaagtaggaattaggattcatttg-gatttggttaagaaaataaaaggaaaaaattcaatggagttttgactccaaggttt 18044107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 17087211 - 17087158
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| ||||    
T  17087211 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttattgggaa 17087158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 26461380 - 26461443
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||| ||||| |||||||| ||||| |||||| |||||||||||||    |||||||||||||||||    
T  26461380 attttgctaagcatcgcgtttcctaaacatacacctaaagcggtaaa----catacaacgtgtgtgcg 26461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 27167996 - 27167942
Alignment:
Q  62 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  27167996 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 27167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 13441319 - 13441239
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  13441319 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 13441239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 14657330 - 14657251
Alignment:
Q  34 ctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    |||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  14657330 ctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 14657251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 15269112 - 15269176
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | ||||||    |||||||||||||||||    
T  15269112 atattttcctaagtattgcgtttcctaagcatgcatctaa-gaggtaaa----catacaacgtgtgtgcg 15269176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 28165931 - 28166135
Alignment:
Q  33 tctaagttggaattagagttcattt-gagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 131  Q
    |||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         |    
T  28165931 tctatgttggaattaaagttcattttgagtttctcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaaaaaaatttc 28166030  T
Q  132 aagtgatggaatttgcttattttnnnnnnnn--gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 229  Q
    |||||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28166031 aagtgatggaatttgcttatttttaaaaaagaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgt 28166130  T
Q  230 gtgcg 234  Q
    |||||    
T  28166131 gtgcg 28166135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17787989 - 17787796
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||         ||    
T  17787989 tctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-ca 17787892  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17787891 agtgatggaatttgcttatt------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgtg 17787798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 19089510 - 19089317
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||         ||    
T  19089510 tctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-ca 19089413  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19089412 agtgatggaatttgcttatt------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgtg 19089319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 15363956 - 15364150
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||         ||    
T  15363956 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aagattttca 15364053  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  15364054 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 15364148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 18526030 - 18525835
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||         ||    
T  18526030 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--aatttttca 18525934  T
Q  133 agtgatggaatttgctt-attttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||  ||||          ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||||||||||    
T  18525933 agtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----catacaacgtgtgt 18525838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 23011703 - 23011897
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||         ||    
T  23011703 tctaagttggaattagagttcatttgag-tttgattaagaaaataaagagaaaattcaatggagttt-gactccaaggtttatttggaa--aaattttca 23011798  T
Q  133 agtgatggaatttgctt-attttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||  ||||          ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||||||||||    
T  23011799 agtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----catacaacgtgtgt 23011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 14141628 - 14141825
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  14141628 tctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-aaaaatttca 14141725  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    ||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||    
T  14141726 agtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtg 14141821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 11646905 - 11647073
Alignment:
Q  45 ttagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatt 144  Q
    |||||||||||||| | |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||         ||||||||||||||    
T  11646905 ttagagttcatttg-gatttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--aagttttcaagtgatggaatt 11647001  T
Q  145 tgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcat 217  Q
    || |||||||        |  |||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  11647002 tgtttattttggaaaattg-gtatttttctaagtatcgcgtttcctaagcatacatctaaagcggcaaatcat 11647073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 19627717 - 19627896
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||  ||||||||||||||| ||||         ||    
T  19627717 tctaagttggaattagagttaatttgagtttga-ttaagaaaataaaaggaaaattcaatggagttttaactccaaggtttatttggaa-aaaaaattca 19627814  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||||||||||| | || ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  19627815 agtgatggaatttacctattttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 19627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 4654269 - 4654099
Alignment:
Q  35 taagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaag 134  Q
    |||| ||||||||||||||||||||||||   |||||||||      |||||||||||||||||| |||||||||||||||| ||||         ||||    
T  4654269 taagctggaattagagttcatttgagtttga-ttaagaaaa------gaaaattcaatggagttttgactccaaggtttatttggaaaaaattt--caag 4654179  T
Q  135 tgatggaatttgcttattttnnnnnnnng--aatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaa 212  Q
    ||||||||||||||| ||||           | |||||| |||||||||||||| |||||||||||||||||||||||||    
T  4654178 tgatggaatttgcttgtttttgaaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaa 4654099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 10929771 - 10929824
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  10929771 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 10929824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 15475832 - 15475885
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15475832 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15475885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 29942773 - 29942720
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  29942773 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 29942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 29991927 - 29991874
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  29991927 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 29991874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 15371682 - 15371629
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15371682 ttaataaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 16614797 - 16614851
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  16614797 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 16614851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 16631120 - 16631174
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  16631120 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 16631174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 22052063 - 22052009
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  22052063 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 22052009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 4883145 - 4883065
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  4883145 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 4883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 8278957 - 8279037
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  8278957 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 8279037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 8307767 - 8307847
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  8307767 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 8307847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 22641414 - 22641494
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  22641414 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 22641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 19704961 - 19704917
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggta 211  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||    
T  19704961 atttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 19704917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 10600865 - 10600818
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  10600865 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 10600818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 15882177 - 15882224
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  15882177 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 15882224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 18046870 - 18046823
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18046870 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18046823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 18062933 - 18062886
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18062933 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18062886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 36131310 - 36131363
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| ||||  |||||||||||||||    
T  36131310 ttaagaaaataaagg-aaaatacaatggagttttgactaaaaggtttattaggaa 36131363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 10115408 - 10115607
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||    
T  10115408 tctaagttgaaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aaattttca 10115505  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||  ||||        | || |||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||||    
T  10115506 agtgatggaatttgctagttttttgaaaatgtatttttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtg 10115605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 18085943 - 18085747
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||         ||    
T  18085943 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaagaa---aagtttca 18085848  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  18085847 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaacctgtgtg 18085749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 21692953 - 21693146
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||         ||    
T  21692953 tctaagttggaattatagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--aaaatttca 21693049  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  21693050 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 21693144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 21707735 - 21707928
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || | ||         ||    
T  21707735 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttgaaa--aaaaattca 21707831  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  21707832 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 21707926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17260392 - 17260195
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||           ||    
T  17260392 tctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattagg--ggaaattttca 17260295  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||| || |||        | || |||| ||||||| |||| ||||||||||| |||||||  |||||||||| |||||||||||||||    
T  17260294 agtgatggaatttgc-tagtttttgaaaatgtat-tttttctaagtagcgcgctccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgtg 17260197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 19446190 - 19446241
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19446190 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19446241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 19460999 - 19461050
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19460999 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19461050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 12651216 - 12651136
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12651216 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12651136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 12666137 - 12666057
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12666137 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12666057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 28269311 - 28269391
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  28269311 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 28269391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 19556451 - 19556501
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  19556451 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 19556501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 20831741 - 20831694
Alignment:
Q  67 ttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  20831741 ttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 20831694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 27388647 - 27388597
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27388647 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27388597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 27399708 - 27399658
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27399708 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 22700226 - 22700173
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| |||||  ||| |||||| |||||||||||||||||||||    
T  22700226 ttaagaaaataaagg-aaaatagaattgagttttgactccaaggtttattaggaa 22700173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 7298 - 7491
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  7298 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 7394  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  7395 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 7489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 77237 - 77044
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  77237 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 77141  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  77140 agtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 77046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 99402 - 99209
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||         ||    
T  99402 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 99306  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        | ||||||| |||||||| ||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  99305 agtgatggaatttgcttattttggaaaattg-atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 99211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 180325 - 180132
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||         ||    
T  180325 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatttggaa--aaattttca 180229  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||| ||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  180228 agtgatggaattttcttattttggaaaattg-atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 180134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 3005 - 2811
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| ||||         ||    
T  3005 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaa--aaattttca 2909  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||| ||||         | |||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||    
T  2908 agtgatggaatttgcttgttttgaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtg 2813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 23600 - 23406
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||         ||    
T  23600 tctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-atttttttca 23503  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||| ||||||||        | ||||||| |||||||||||||| |||||||||||||||||||||||| |    |||||||||||||||    
T  23502 agtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaga----catacaacgtgtgtg 23408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 126235 - 126034
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||| |||||| ||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||  |||         ||    
T  126235 tctaagtttgaattaaagttcatttgaattttgcttaagaaaataaagggaaagtgcaatggagttttgactccaaggtttatt-tgaaaaaaaatttca 126137  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||| ||||| | ||||        ||||||||| ||||||||| |||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  126136 agtgatggaacttgctaactttttgggaaatgaatatttttctaagtatcacgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 126037  T
Q  232 gcg 234  Q
    |||    
T  126036 gcg 126034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 22963 - 22763
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | ||         ||    
T  22963 tctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaa--aaattttca 22866  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||| || || | ||||        ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  22865 agtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtgt 22766  T
Q  232 gcg 234  Q
    |||    
T  22765 gcg 22763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17713 - 17520
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||         ||    
T  17713 tctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattaggaa-ttttttttca 17616  T
Q  133 agtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    ||||||||||||||||||||||        |  |||||| |||||||||| ||||||||||||| |||||||  |||||||    |||||||||||||||    
T  17615 agtgatggaatttgcttattttttgaaaatg--tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgtg 17522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 22859 - 22665
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| ||||         ||    
T  22859 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaa--aaattttca 22764  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  22763 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 22668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 49985 - 50179
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| ||||         ||    
T  49985 tctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaa--aaattttca 50080  T
Q  133 agtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 231  Q
    |||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||    
T  50081 agtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtgt 50176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 5530 - 5612
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 116  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5530 tctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 5612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 5663 - 5709
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 213  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  5663 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 1376 - 1457
Alignment:
Q  39 ttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1376 ttggaattaaagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa 1457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 1500 - 1564
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||| |||||||| ||||||||||| |||||||||||  ||||||   | |||||||||||||||||    
T  1500 atttttctaagtatagcgttccctaaacatacatctaagacggtaa---accatacaacgtgtgtgcg 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 17650 - 17455
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnca 132  Q
    |||||||||||||||||||| ||||||||||   ||||||||||||| | ||||| ||||||||||| |||||||||||||||| ||||         ||    
T  17650 tctaagttggaattagagtttatttgagtttga-ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttattcggaa--aaattttca 17555  T
Q  133 agtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 230  Q
    |||||||||||||| |||  ||||          | ||||| |||||| ||||||| ||||||||||||||||||||||||||    |||||||||||||    
T  17554 agtgatggaatttgtttatttttttggaaaattgacatttttctaagtgtcgcgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 17459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 10963 - 11016
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  10963 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 11016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 17261 - 17177
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  17261 tctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 17177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 31505 - 31421
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  31505 tctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 31421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 17133 - 17069
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  17133 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 17069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 31377 - 31313
Alignment:
Q  165 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 234  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  31377 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 31313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 15236 - 15286
Alignment:
Q  70 agaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15236 agaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 15323 - 15387
Alignment:
Q  163 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 232  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||    
T  15323 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtg 15387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 12727 - 12672
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaa 121  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||    
T  12727 ttaagaaaataaagagaaaagttcaatggagttttgactccaaggtttatttggaa 12672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 12621 - 12577
Alignment:
Q  167 attttcctaagtatcgcgttccctaagcatacatctaaagcggta 211  Q
    ||||| |||||| |||| || ||||||||||||||||||||||||    
T  12621 atttttctaagtgtcgcatttcctaagcatacatctaaagcggta 12577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 26228 - 26308
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  26228 tctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 26308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 72668 - 72748
Alignment:
Q  33 tctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  72668 tctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 72748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 8547 - 8497
Alignment:
Q  67 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 118  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  8547 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 8497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 11382 - 11429
Alignment:
Q  67 ttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 113  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  11382 ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 11429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University