View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7770_low_16 (Length: 221)
Name: NF7770_low_16
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3657364 - 3657170
Alignment:
| Q |
1 |
agcttctgttctcagctgcattgccacttaaaatggagagcaggacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaattatcattt |
100 |
Q |
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| T |
3657364 |
agcttctgttctcagctgcattgccgcttaaaatggagagcaagacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaattatcattt |
3657265 |
T |
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| Q |
101 |
aaggctttgtttgtttacatttgatttgtaatgtttgact-----------gaacttgattggactttgtctaattggtatttggtgctgtaaat |
184 |
Q |
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| T |
3657264 |
aaggctttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggactctgtctaatcggtatttggttctgtaaat |
3657170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 3655690 - 3655628
Alignment:
| Q |
159 |
tctaattggtatttggtgctgtaaattaaatggatttgtaatgctaccttctcaacaattatt |
221 |
Q |
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| T |
3655690 |
tctaattggtatttggttctgtaaattaaatggatttgcaatgctcccttctcaacaattatt |
3655628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 3647738 - 3647680
Alignment:
| Q |
159 |
tctaattggtatttggtgctgtaaattaaatggatttgtaatgctaccttctcaacaat |
217 |
Q |
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| T |
3647738 |
tctaattggtatttggttttgtaaattaaatggatttgtaatgctcccttctcaacaat |
3647680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 3649184 - 3649140
Alignment:
| Q |
79 |
aaatgtcataaaattatcatttaaggctttgtttgtttacatttg |
123 |
Q |
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| T |
3649184 |
aaatgtcataacattatcatgtaaggctttgtttgtttacatttg |
3649140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 3659624 - 3659537
Alignment:
| Q |
4 |
ttctgttctcagctgcattgccacttaaaatggagagcag----gacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcat |
87 |
Q |
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| T |
3659624 |
ttctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcat |
3659537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 36164579 - 36164535
Alignment:
| Q |
79 |
aaatgtcataaaattatcatttaaggctttgtttgtttacatttg |
123 |
Q |
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| T |
36164579 |
aaatgtcataacattatcatgtaaggctttgattgtttacatttg |
36164535 |
T |
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