View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7770_low_2 (Length: 582)
Name: NF7770_low_2
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 5950367 - 5950916
Alignment:
| Q |
19 |
cctctcacattcacttgtagaaggttcttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaaaaccttgtacacttg |
118 |
Q |
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| T |
5950367 |
cctctcacattcacttgtagaaggttcttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaaaaccttgtacacttg |
5950466 |
T |
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| Q |
119 |
tgactcatgatgggatgtttatcgtttcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcgaaatatgtatatgaagagc |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5950467 |
tgactcatgatgggatgtttattgtttcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcggaatatgtatatgaagagc |
5950566 |
T |
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| Q |
219 |
ataacgagctgtcatcatcgaacgtatcatctacaaaaacagtttatcaggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttg |
318 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950567 |
ataacgagctgtcataatcaaacgtatcatctacaaaaacagtttatcaggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttg |
5950666 |
T |
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| Q |
319 |
tgaagggaaaaagaagacgtaccatggtgccagcgatatccatttgatatgtcatcagctctattgactgcacccgacaatgattcttgtgacgatgaaa |
418 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950667 |
tgaagggaaaaagaagacgtaccagggtgccagcgatatccatttgatatgtcatcaactctattgactgcacccgacaatgattcttgtgacgatgaaa |
5950766 |
T |
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| Q |
419 |
cagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtctggataactgttcgtcctatctggaagtagcattgatatctc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5950767 |
cagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtcttgataactgttcgtcctatctggaagtagcattgatatctc |
5950866 |
T |
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| Q |
519 |
tgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950867 |
tgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
5950916 |
T |
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