View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7770_low_4 (Length: 387)

Name: NF7770_low_4
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7770_low_4
NF7770_low_4
[»] chr3 (5 HSPs)
chr3 (18-294)||(24414379-24414655)
chr3 (18-84)||(24419516-24419582)
chr3 (271-351)||(24414659-24414740)
chr3 (18-97)||(24379322-24379401)
chr3 (18-84)||(24402126-24402192)
[»] chr4 (1 HSPs)
chr4 (245-299)||(3591848-3591902)
[»] chr7 (1 HSPs)
chr7 (309-342)||(653689-653722)
[»] chr2 (1 HSPs)
chr2 (244-289)||(42720780-42720825)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 24414379 - 24414655
Alignment:
Q  18 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatcgaaattcactagtaattctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||    
T  24414379 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtactactcttaccaatcgaaattcactagtaattatt 24414478  T
Q  118 cttttacaataaaatcttaccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcattagaaaaag 217  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24414479 tttttacaataaaatcataccttttgatttatcataacttaaggtctttttgtattccctcatgtcaaattgatgaaacaattgtactcatcagaaaaag 24414578  T
Q  218 tacaattatttgcaacatgcaatctttgtagcaccgacacttctatttgaaagtgtgtttgatgtccgacactgata 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24414579 tacaattatttgcaacatgcaatctttgtagcaccgacacttctatttgaaaatgtgtttgatgtccgacactgata 24414655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 24419582 - 24419516
Alignment:
Q  18 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24419582 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact 24419516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 24414659 - 24414740
Alignment:
Q  271 tgtgtttgatgtccgacactgatatgacaacgtcacgtattattacatttaatta-attaattttttcaagttattaatatt 351  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||  |||||||||||||||||||||    
T  24414659 tgtgtttgatgtccgacactgatatgacaacgtcacatattattacatttaattattttttttttttcaagttattaatatt 24414740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 24379322 - 24379401
Alignment:
Q  18 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtacttatcttaccaatc 97  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||    
T  24379322 cttactggcttattgaccttgccaatgtttgcattatcattcatttggttggaggatatcaggtactactcttaccaatc 24379401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 24402126 - 24402192
Alignment:
Q  18 cttattggcttattgacattgccaatgtttgtattatcattcatttggttggaggctatcaggtact 84  Q
    |||| |||||| ||||||||||||||||||| |||||  |||||||||||||||| |||||||||||    
T  24402126 cttactggcttgttgacattgccaatgtttgcattatggttcatttggttggaggttatcaggtact 24402192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 3591848 - 3591902
Alignment:
Q  245 gtagcaccgacacttctatttgaaagtgtgtttgatgtccgacactgatatgaca 299  Q
    |||||||| ||||||| | |||||||||||| || ||||||||||||||||||||    
T  3591848 gtagcaccaacacttcaaattgaaagtgtgtctggtgtccgacactgatatgaca 3591902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 653722 - 653689
Alignment:
Q  309 attattacatttaattaattaattttttcaagtt 342  Q
    ||||||||||| ||||||||||||||||||||||    
T  653722 attattacattcaattaattaattttttcaagtt 653689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 42720825 - 42720780
Alignment:
Q  244 tgtagcaccgacacttctatttgaaagtgtgtttgatgtccgacac 289  Q
    ||||||||||||||||||| ||||| || |||||||||||| ||||    
T  42720825 tgtagcaccgacacttctaattgaatgtatgtttgatgtccaacac 42720780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University