View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7770_low_6 (Length: 386)

Name: NF7770_low_6
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7770_low_6
NF7770_low_6
[»] chr4 (5 HSPs)
chr4 (1-378)||(38176960-38177337)
chr4 (2-333)||(5532525-5532856)
chr4 (16-309)||(5934651-5934944)
chr4 (16-279)||(5921191-5921454)
chr4 (1-228)||(37088726-37088938)
[»] chr2 (1 HSPs)
chr2 (16-378)||(11731831-11732193)
[»] chr1 (1 HSPs)
chr1 (17-378)||(45452394-45452755)
[»] chr3 (1 HSPs)
chr3 (1-378)||(53145972-53146349)
[»] chr7 (1 HSPs)
chr7 (17-321)||(34841606-34841910)
[»] chr8 (2 HSPs)
chr8 (11-324)||(40916254-40916567)
chr8 (16-378)||(45320256-45320618)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 38176960 - 38177337
Alignment:
Q  1 gtactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176960 gtactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgccta 38177059  T
Q  101 aacatagctgtgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177060 aacatagctgtgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggta 38177159  T
Q  201 tatcacacacgctagacttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177160 tatcacacacgctagacttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggt 38177259  T
Q  301 gctcatcttaccacggaacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177260 gctcatcttaccacggaacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 38177337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 2 - 333
Target Start/End: Complemental strand, 5532856 - 5532525
Alignment:
Q  2 tactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaa 101  Q
    ||||| || |||| |||||||||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |    
T  5532856 tactcagcaaccagatcattcatgttgctctcagcctcagtgaattccatttcgtccatgccttcaccagtgtaccaatgcaagaaagcctttctcctga 5532757  T
Q  102 acatagctgtgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtat 201  Q
    ||||||| ||||||||||| || || || | |||||| || ||||| ||||| || || |||||||| || || ||||  || |  || ||||| || ||    
T  5532756 acatagcagtgaactgctcactcaccctacggaacatttcctgaatggatgtggagtttccaatgaatgttgaagccattttcaaccctgttgggggaat 5532657  T
Q  202 atcacacacgctagacttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtg 301  Q
    |||||| ||  ||||||| || ||||| || ||||| ||||||||||| || ||||| |||||||| ||||| ||||| || || || ||||||||||||    
T  5532656 atcacagacagtagacttcacattgtttggaatccattcaacaaagtaggatgagttcttgttctggacattcatcatttgttcatcaacctccttggtg 5532557  T
Q  302 ctcatcttaccacggaacattgctgaagcagt 333  Q
    |||||||| || |  ||||| |||||||||||    
T  5532556 ctcatcttgcctctaaacatggctgaagcagt 5532525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 5934651 - 5934944
Alignment:
Q  16 atcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaac 115  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | ||| |||||||| || |||    
T  5934651 atcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtaccaatgcaagaaagcctttctcctgaacatagcagtaaac 5934750  T
Q  116 tgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctag 215  Q
    ||||| || || || | |||||| |||||||| || ||||| || || ||||| || || |||| ||| |  || |||||||| |||||||| ||  | |    
T  5934751 tgctcactcacccttcggaacatttcttgaattgaagttgagtttccgatgaatgtagaagccatcttcaaccctgttggtggaatatcacaaacagttg 5934850  T
Q  216 acttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatctt 309  Q
    | ||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| ||||| ||||| || || || || ||||| |||||||||||    
T  5934851 atttgacattgtttggaatccattcaacgaagtaggatgagttcttgttctgaacattgatcatttgttcatcaacttcctttgtgctcatctt 5934944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 5921191 - 5921454
Alignment:
Q  16 atcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaac 115  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | ||| |||||||| || |||    
T  5921191 atcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtaccaatgcaagaaagcctttctcctgaacatagcagtaaac 5921290  T
Q  116 tgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctag 215  Q
    ||||| || || || | |||||| |||||||| || ||||| || || ||||| || || |||| ||| |  || |||||||| |||||||| ||  | |    
T  5921291 tgctcactcacccttcggaacatttcttgaattgaagttgagtttccgatgaatgtagaagccatcttcaaccctgttggtggaatatcacaaacagttg 5921390  T
Q  216 acttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcat 279  Q
    | ||||| ||||| || ||||| || || ||||| || ||||| |||||||| ||||| |||||    
T  5921391 atttgacattgtttggaatccattcgacgaagtaggatgagttcttgttctgaacattgatcat 5921454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37088726 - 37088938
Alignment:
Q  1 gtactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgccta 100  Q
    |||||| |||||||||||||||||||||||||| ||||| | |  ||    ||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  37088726 gtactcagccaccaaatcattcatgttactctcagcctcggggtgct----ttcttccattccctcaccagcgtaccaatacaagaaagccttgcgccta 37088821  T
Q  101 aacatagctgtgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggta 200  Q
    |||||||||||||||| |||||| |||||| |||||||||  ||||| | ||||||||| ||||||||         ||  | || || | |||||||||    
T  37088822 aacatagctgtgaacttctcgctaactctcttgaacatct--tgaatgggtgttgaatttccaatgaa---------catataaatactctttggtggta 37088910  T
Q  201 tatcacacacgctagacttgacgttgtt 228  Q
    || |||||||||||||||||||||||||    
T  37088911 taacacacacgctagacttgacgttgtt 37088938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 11731831 - 11732193
Alignment:
Q  16 atcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaac 115  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11731831 atcattcatgttactctcagcctcagtgaactccatttcgtccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaac 11731930  T
Q  116 tgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctag 215  Q
    ||||| || ||||||||||||||||| || || || |||||||| || |||||||| ||||||| |||||| ||| ||||||| |||||||| ||||| |    
T  11731931 tgctcactaactctcctgaacatctcctggatcgaagttgaattaccgatgaaagttgatgccatcttaaggccctttggtgggatatcacatacgctgg 11732030  T
Q  216 acttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatcttaccacg 315  Q
    |||| || || || |||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| || || ||||| |||||||||||||||||    
T  11732031 acttaacattatttggtatccactcaacaaagtatgaagagttcttgttttgcacattgatcatctgctcatctacttcctttgtgctcatcttaccacg 11732130  T
Q  316 gaacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 378  Q
    |||||||||||| || ||||||||||| || ||||||||||| ||||| |||||||| |||||    
T  11732131 gaacattgctgatgcggtcaaataacggccatggcgtggatcagcagcacacatcatgttctt 11732193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 45452394 - 45452755
Alignment:
Q  17 tcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaact 116  Q
    ||||||||||| || || || ||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| || |  |  |||||||| ||||| |    
T  45452394 tcattcatgttgctttctgcttcagtaaactccatctcatccataccctctccagtataccaatgcaagaaagcttttctgcggaacatagccgtgaatt 45452493  T
Q  117 gctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctaga 216  Q
    |||| || || ||||| ||||| |||||||||||||| || || ||||| ||||| || ||||  |||||||| ||||| || |||||||| ||  | ||    
T  45452494 gctcactcaccctcctaaacatttcttgaatagatgtggagttaccaataaaagtagaagccattttaagaccagttggagggatatcacagacagtgga 45452593  T
Q  217 cttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatcttaccacgg 316  Q
     || || |||||||| ||||||||||||||||| || || || |||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||    
T  45452594 tttcacattgttgggaatccactcaacaaagtatgatgaattcttgttctgaacattgatcatctgctcatcaacctccttggtgctcatcttaccacgg 45452693  T
Q  317 aacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 378  Q
    ||||| || || || |||||||||||||||||||| ||||| || ||||||||||| |||||    
T  45452694 aacatggcagatgctgtcaaataacgaccgtggcgaggatcagcggcgcacatcatgttctt 45452755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 53145972 - 53146349
Alignment:
Q  1 gtactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgccta 100  Q
    ||||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||      
T  53145972 gtactctgctaccaaatcgttcatgttactttctgcctccgtgaactccatctcatccattccctccccagtataccaatgcaaaaaggccttgcgccgg 53146071  T
Q  101 aacatagctgtgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggta 200  Q
    ||||| || || |||||||| ||||| |||||||||||||| ||||| || || || || ||||| |||||||| | || ||| | |  | | ||||| |    
T  53146072 aacattgcagtaaactgctcactgaccctcctgaacatctcctgaattgaagtagagttcccaataaaagtggacgacatcttcaaattcttgggtggga 53146171  T
Q  201 tatcacacacgctagacttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggt 300  Q
    |||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||| || |||||||| ||||| || || || || || ||||| |||||    
T  53146172 tatcacacacactagacttcacattgttgggaatccattcaacaaagtatgaagaattcttgttctgcacattgatgatttgttcatcaacctctttggt 53146271  T
Q  301 gctcatcttaccacggaacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 378  Q
    ||||||||| || | ||||||||| || ||||| || || ||||| || || || || ||||| ||||||||||||||    
T  53146272 gctcatctttcctctgaacattgcagatgcagttaagtatcgaccatgtcgagggtcagcagcacacatcatattctt 53146349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 34841910 - 34841606
Alignment:
Q  17 tcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaact 116  Q
    ||||||||||| ||||| || || ||||| |||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||| || || |    
T  34841910 tcattcatgttgctctctgcttctgtgaattccatttcatccatgccttcaccagtgtaccaatgcaagaaagccttcctcctaaacatagcggtaaatt 34841811  T
Q  117 gctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctaga 216  Q
    ||||||| || ||||| ||||| || ||||| || ||||| || || || || ||||| ||||     |||||  | || |  || ||||| || || ||    
T  34841810 gctcgctcaccctcctaaacatttcctgaattgaggttgagttaccgataaaggtggaggccatggagagacctctaggagcaatgtcacaaacacttga 34841711  T
Q  217 cttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatcttaccacgg 316  Q
    ||| || |||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| | |    
T  34841710 cttaacattgttggggatccactcaacaaagtaggaagagttcttgttctggacatttatcatttgctcatccacctctttggtgctcatcttacccctg 34841611  T
Q  317 aacat 321  Q
    |||||    
T  34841610 aacat 34841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 40916254 - 40916567
Alignment:
Q  11 accaaatcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctg 110  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||| |||| ||||||||||| || ||||| | | |||||||| | |    
T  40916254 accaaatcattcatattactctcagcctcagtaaactccatctcatccattccttcagcagtataccaatgcaaaaatgcctttctcttaaacataacag 40916353  T
Q  111 tgaactgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacac 210  Q
    | ||||||||    || |  || ||||| |||||||||||||| ||||| || || || || || | || |   |  || ||||| || |||||||| ||    
T  40916354 taaactgctccgaaacacgtctaaacatttcttgaatagatgtcgaattccccataaatgtcgaagacatcgacaaccctgttggcggaatatcacaaac 40916453  T
Q  211 gctagacttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatctta 310  Q
     || || || || ||||| || ||||| || ||||||||||| ||||| |||||||| ||||| |||||||| |  || || || || |||||||| ||     
T  40916454 acttgatttcacattgtttggaatccattccacaaagtaagacgagttcttgttctgaacatttatcatctgttgatcaacttcttttgtgctcattttg 40916553  T
Q  311 ccacggaacattgc 324  Q
    ||||||||||||||    
T  40916554 ccacggaacattgc 40916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 45320618 - 45320256
Alignment:
Q  16 atcattcatgttactctcggcctcagtgaactccatttcatccattccctcaccagtgtaccaatgcaagaaagccttgcgcctaaacatagctgtgaac 115  Q
    ||||||||| || || || || ||||| || ||||||||||||||||| || || || |||||||||||||| || || |  || ||||| || | ||||    
T  45320618 atcattcatattgctttctgcttcagtaaattccatttcatccattccttctccggtataccaatgcaagaatgctttccttctgaacatggcagagaac 45320519  T
Q  116 tgctcgctgactctcctgaacatctcttgaatagatgttgaattgccaatgaaagtggatgccaacttaagacccgttggtggtatatcacacacgctag 215  Q
    || || || |||||||| |||||||| || |||||||| ||||||||||  || || || |||| |  ||| ||  | ||||| | |||||| || || |    
T  45320518 tgttcactcactctcctaaacatctcctgtatagatgtcgaattgccaacaaatgtcgaagccatcgaaaggcctctaggtgggacatcacagacactgg 45320419  T
Q  216 acttgacgttgttgggtatccactcaacaaagtaagaagagtttttgttctgtacattaatcatctgctcgtccacctccttggtgctcatcttaccacg 315  Q
    |||| || || ||||| ||||| ||||| ||||||||||| || |||||||| ||||| || | ||| || ||||| || || |||||||| || || |     
T  45320418 acttcacattattgggaatccattcaacgaagtaagaagaattcttgttctgcacattcattacctgttcatccacttcttttgtgctcattttccctct 45320319  T
Q  316 gaacattgctgaagcagtcaaataacgaccgtggcgtggatctgcagcgcacatcatattctt 378  Q
     ||||  ||||| || || |||||||| || ||||||||||| || || |||||||| |||||    
T  45320318 aaacaccgctgaggctgttaaataacggccatggcgtggatccgccgcacacatcatgttctt 45320256  T

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