View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7770_low_7 (Length: 366)
Name: NF7770_low_7
Description: NF7770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7770_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 5950587 - 5950916
Alignment:
| Q |
23 |
aacgtatcatctacaaaaacagtttatcaggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgt |
122 |
Q |
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| T |
5950587 |
aacgtatcatctacaaaaacagtttatcaggtcaatcatttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgt |
5950686 |
T |
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| Q |
123 |
accatggtgccagcgatatccatttgatatgtcatcagctctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaa |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950687 |
accagggtgccagcgatatccatttgatatgtcatcaactctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaa |
5950786 |
T |
|
| Q |
223 |
tgatgataacgacgaggacttgcattattctcgtcgtctggataactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950787 |
tgatgataacgacgaggacttgcattattctcgtcgtcttgataactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaa |
5950886 |
T |
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| Q |
323 |
tttcagaaggatcccaatttgtgatgtcca |
352 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5950887 |
tttcagaaggatcccaatttgtgatgtcca |
5950916 |
T |
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