View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_high_3 (Length: 441)
Name: NF7771_high_3
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 33 - 424
Target Start/End: Complemental strand, 2321983 - 2321587
Alignment:
| Q |
33 |
tgttgtcttatctc-tgatttgtcttattaactatagaactttagcaatcggtgcaggataagttccaatattgaatatttgttgttgataaagtgttat |
131 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
2321983 |
tgttgtcttatctcatgttttgtcttattgactatagaactttagcaatcggtgcaggataagtcccaacattgaatatttgttgttgataaagtgttat |
2321884 |
T |
|
| Q |
132 |
gtgagttgaatcttgccatatgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttgtggt |
231 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
2321883 |
gtgagttgaatcttgccatgtgaagtgttatatctcttattgcccaacaaattacgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttatcgt |
2321784 |
T |
|
| Q |
232 |
gctatatagcatga--ctaacttaaattacacttataagacgttaatatgaacttcaaattagataattagatcattaacactttatagtttttatcatt |
329 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321783 |
gctatatagcatgactctaacttaaattacacttataagacgttaatatgaactgcaaattagataattagatcattaacactttatagtttttatcatt |
2321684 |
T |
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| Q |
330 |
atggttctcta--nnnnnnnnnaatttattgacagaagcatatcgaataaaggtactgctatatcaaatgcataaaaatctgaaatggcacctacgt |
424 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321683 |
atggttctctatttttttttttaatttattgacagaagcatatcaaataaaggtactgctatatcaaatgcataaaaatctgaaatggcacctacgt |
2321587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 247 - 424
Target Start/End: Complemental strand, 12486219 - 12486046
Alignment:
| Q |
247 |
taacttaaattacacttataagacgttaatatgaacttcaaattagataattagatcattaacactttatagtttttatcattatggttctctannnnnn |
346 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12486219 |
taacttaaattacacttataagaagttaatatgaactgcaaattagatcattagatcattaacactttatagtttttatcattatggttctctatttttt |
12486120 |
T |
|
| Q |
347 |
nnnaatttattgacagaagcatatcgaataaaggtactgctatatcaaatgcataaaaatctgaaatggcacctacgt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
12486119 |
t----tttattgacagaagcatatcgaataaaggtactgctatatcaaatgcataaaaaactgaaatggcacctacgt |
12486046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 3992407 - 3992619
Alignment:
| Q |
33 |
tgttgtcttatctctgatttgtcttattaactatagaactttagcaatcggtgcaggataagttccaatattgaatatttgttgttgataaagtgttatg |
132 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |
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| T |
3992407 |
tgttgtctcatctctgttttgtcttattaactatagaactttagcaatcggtgcaggataagttccaacattgaatagttgttgttgttaaagtgttatg |
3992506 |
T |
|
| Q |
133 |
tgagttgaatcttgccatatgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttgtggtg |
232 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| ||| ||||||||||| ||| |
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| T |
3992507 |
tgagttgaatcttgccatgtgaagtgttatatctgttattgcccagcaaactgcgtgctgttccatctgtcgtgtgtatttgtgtctaaggtttgtcgtg |
3992606 |
T |
|
| Q |
233 |
ctatatagcatga |
245 |
Q |
| |
|
||||||||||||| |
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|
| T |
3992607 |
ctatatagcatga |
3992619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 32988684 - 32988898
Alignment:
| Q |
33 |
tgttgtcttatctctgatttgtcttattaactatagaactttagcaatcggtgcaggataagttccaatattgaatatttgttgttgataaagtgttatg |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||| ||||||||| |||| ||||||| |
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| T |
32988684 |
tgttgtcttatctctgttttgtcttattaactatagaactttagtaatcgatgcaggataagtcccaacattgaatacttgttgttgttaaattgttatg |
32988783 |
T |
|
| Q |
133 |
tgagttgaatcttgccatatgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttgtggtg |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
32988784 |
tgagttgaatcttgccatgtgaagtgttatatatgttattgcccagcaaattgcgtgttgttccatctgtcgtgtgtattcgtgtctaaggtttgtcgtg |
32988883 |
T |
|
| Q |
233 |
ctatatagcatgact |
247 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32988884 |
ctatatagcatgact |
32988898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 16220079 - 16219865
Alignment:
| Q |
33 |
tgttgtcttatctctgatttgtcttattaactatagaactttagcaatcggtgcaggataagttccaatattgaatatttgttgttgataaagtgttatg |
132 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||| |||| ||||||| |
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|
| T |
16220079 |
tgttgtcttatctctgttttgtcatattaactatagaactttagcaatcggtgcaggataagtcccagcactgaatacttgttgttcttaaaatgttatg |
16219980 |
T |
|
| Q |
133 |
tgagttgaatcttgccatatgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttgtggtg |
232 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||| |
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| T |
16219979 |
tgagttgaatcttgccatgtgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctatcgtgtgtattcgtgttcaagggttgtcgtg |
16219880 |
T |
|
| Q |
233 |
ctatatagcatgact |
247 |
Q |
| |
|
||||||||||||||| |
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|
| T |
16219879 |
ctatatagcatgact |
16219865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 7311102 - 7311313
Alignment:
| Q |
33 |
tgttgtcttatctctgatttgtcttattaactatagaactttagcaatcggtgcaggataagttccaatattgaatatttgttgttgataaagtgttatg |
132 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||| ||||| |||||||||||| |
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|
| T |
7311102 |
tgttgtctcacctctgttttgtcttattaactatagaactttagcaatcggtgcaggataaatctcaacattgaatacttgctgttgttaaagtgttatg |
7311201 |
T |
|
| Q |
133 |
tgagttgaatcttgccatatgaagtgttatatctgttattgcccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgcctaaggtttgtggtg |
232 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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|
| T |
7311202 |
tgagttgaatcttgtcatttgaagtgttatatctgttattatccaacaaattgcgtgttgttccatctgtcgtgtgtattcgtgtctaaggtgtgtcgtg |
7311301 |
T |
|
| Q |
233 |
ctatatagcatg |
244 |
Q |
| |
|
|||||||||||| |
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|
| T |
7311302 |
ctatatagcatg |
7311313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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