View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7771_high_4 (Length: 431)
Name: NF7771_high_4
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_high_4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 32129953 - 32130367
Alignment:
| Q |
17 |
atatgtcacatgatggctaatccatgaatatgttcctaactttaatattcaaaattacagctatgtctcatcattttagcactccttcattgccttatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32129953 |
atatgtcacatgatggctaatccatgaatatgttcctaactttaatatgcaaaattacagctatgtctcatcattttagcactccttcattgccttatgt |
32130052 |
T |
|
| Q |
117 |
gattcttctattcattcaacaattgcacattgcaacttcacttctctaccccataacaaatgttttggcacccttctagtaagacattaagattgctaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32130053 |
gattcttctattcattcaacaattgcacattgcaacttcacttctctgccccataacaaatgttttggcacccttctagtaagacattaagattgctaaa |
32130152 |
T |
|
| Q |
217 |
tctaagggtggccttacctcaaagcaattcataaaaaattgtactatttgcctatttagctgggtcttcactcactgatagtactgaaaaaagcatagaa |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32130153 |
tctaaggttggccttacctcaaagcaattcataaaaaattgtactatttgcctatttagctgggtcttcactcactgatagtactgaaaaaagcatagaa |
32130252 |
T |
|
| Q |
317 |
aattatcactacaagggtaattatgtcacatactctaatatgatttttggcctagatgcttcatcctagatagtaataatgaatacataatgatatagag |
416 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32130253 |
aaatatcactacaagggtaattatgttacatactctaatatgatttttggcctagatgcttcatcctagatagtaataatgaatacataatgatatagag |
32130352 |
T |
|
| Q |
417 |
tgtggctgaaaaagt |
431 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
32130353 |
tgaggttgaaaaagt |
32130367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University