View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_high_6 (Length: 343)
Name: NF7771_high_6
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 32679883 - 32679640
Alignment:
| Q |
16 |
cactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctc |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679883 |
cactacttgtatataaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctc |
32679784 |
T |
|
| Q |
116 |
tttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgactt |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32679783 |
tttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggttttcatcctttatgggttgtacctgactt |
32679684 |
T |
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| Q |
216 |
ctaaaccttttcatcctttatggttgtacctgacttctaaacct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679683 |
ctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
186 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
233 |
Q |
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| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
56 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
155 |
Q |
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| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
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| Q |
156 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
222 |
Q |
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|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
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| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
225 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
304 |
Q |
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|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
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| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28136202 - 28136025
Alignment:
| Q |
16 |
cactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctattttt-gcatatatggagtct |
114 |
Q |
| |
|
||||||| |||| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||| ||||||||||||||| |
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| T |
28136202 |
cactactcgtatccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtct |
28136103 |
T |
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| Q |
115 |
ctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
197 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
28136102 |
ctttcttcatgtagct-----gttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
224 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
304 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
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| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 44806667 - 44806795
Alignment:
| Q |
41 |
attccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttat |
140 |
Q |
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|||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||||||||| |
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| T |
44806667 |
attctgctcattatttgaattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttat |
44806766 |
T |
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| Q |
141 |
gatgtgttttacatgatatttgagataac |
169 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44806767 |
gatgtgttttacatgatatttgagataac |
44806795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
224 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
291 |
Q |
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|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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