View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_high_9 (Length: 263)
Name: NF7771_high_9
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 13308726 - 13308966
Alignment:
| Q |
1 |
agaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataat |
100 |
Q |
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| T |
13308726 |
agaaatggcaatgatgggccatgaccattttgggataactatgagcaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataat |
13308825 |
T |
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| Q |
101 |
agagatgagaatgtcccatttggtcatcctcatgatgctagtcttcaaaatggattttggcctaatctactaccttgaataagatgatgtgtttgttttt |
200 |
Q |
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| T |
13308826 |
agagatgagaatgtcccatttggtcatcctcatgatgctagtcttcaaaatggattttggcctaatctactaccttgaatgagatgatgtgtttgttttt |
13308925 |
T |
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| Q |
201 |
caaaccttttgagttggatttgctccaatttagtctcaatt |
241 |
Q |
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| T |
13308926 |
caaaccttttgaggtggatttgttccaatttagtctcaatt |
13308966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 9894860 - 9894797
Alignment:
| Q |
3 |
aaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaag |
66 |
Q |
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| T |
9894860 |
aaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaag |
9894797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11100175 - 11100249
Alignment:
| Q |
1 |
agaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatt |
75 |
Q |
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| T |
11100175 |
agaaatggcaattatgggtgatggccatgttgggatacctattaataatgatgacattatgcaaagacaattatt |
11100249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11247881 - 11247759
Alignment:
| Q |
1 |
agaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataat |
100 |
Q |
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||||||||||| |||||| |||| |||| |||||| ||| |||| |||||||| ||||| |||| ||| | || ||| ||||||||||||| |||| |
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| T |
11247881 |
agaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggtaat |
11247782 |
T |
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| Q |
101 |
agagatgagaatgtcccatttgg |
123 |
Q |
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| T |
11247781 |
ggagatgagacagttccatttgg |
11247759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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