View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7771_low_10 (Length: 377)

Name: NF7771_low_10
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7771_low_10
NF7771_low_10
[»] chr1 (1 HSPs)
chr1 (1-362)||(34900536-34900898)
[»] chr2 (4 HSPs)
chr2 (216-314)||(26894639-26894737)
chr2 (216-314)||(26900078-26900176)
chr2 (216-314)||(4405789-4405887)
chr2 (98-152)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (234-339)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (216-314)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (264-315)||(29467354-29467405)
chr7 (258-320)||(30944960-30945022)
chr7 (258-314)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 34900898 - 34900536
Alignment:
Q  1 agctagaagagaaccacacaaaggcacaaacatttatttaattcacaatc-gttgtatatttgaaaacttataaagtttgtaaaagttgtcaattaaata 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34900898 agctagaagagaaccacacaaaggcacaaacatttatttaattcacaatcagttgtatatttgaaaacttataaagtttgtaaaagttgtcaattaaata 34900799  T
Q  100 aaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttaacaatataatca 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34900798 aaaatatttcaaaagaaattcgaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttagtaatataatca 34900699  T
Q  200 taaccagtgaggcgaaaactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttt 299  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34900698 taacgagtgaggcgagaactagttccatttcattgatagctcttttcttctaagagctgtctttcccttagtggtggcttcatctaacatataactcttt 34900599  T
Q  300 tctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatccctttgat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34900598 tctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatctctttgat 34900536  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 26894639 - 26894737
Alignment:
Q  216 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 314  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26894639 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26894737  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 26900078 - 26900176
Alignment:
Q  216 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 314  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26900078 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26900176  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 4405887 - 4405789
Alignment:
Q  216 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 314  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| ||||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  4405887 aactagctccatctcgttgatagctctttcctactaagagtggcctttcccttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 4405789  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 20023954 - 20024008
Alignment:
Q  98 taaaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataac 152  Q
    |||||||||||||||||||| || |||||||||| ||| |||||||| |||||||    
T  20023954 taaaaatatttcaaaagaaaatcaaacgttgtaaagagatggaatcagaaataac 20024008  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 183182 - 183286
Alignment:
Q  234 gatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaaacataagatattt 333  Q
    ||||||||||||||||||||||    ||| || |||||||| ||| || |||||| |||||||||||||||||| || ||||||||||| ||| ||||||    
T  183182 gatagctcttttctcctaagagtgacctttcctttagtggtagctccacctaacaaataactcttttctctcgactc-aaaacaaaaacgtaaaatattt 183280  T
Q  334 ctcaat 339  Q
     |||||    
T  183281 ttcaat 183286  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 9814797 - 9814699
Alignment:
Q  216 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 314  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  9814797 aactagctccatctcgttgatagctctttcctactaagagtggcctttctcttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 9814699  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 29467354 - 29467405
Alignment:
Q  264 cccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaa 315  Q
    ||||||||||| | ||||||||||| ||| |||||||||||||| |||||||    
T  29467354 cccttagtggtagattcatctaacagatatctcttttctctcgactcaaaaa 29467405  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 30945022 - 30944960
Alignment:
Q  258 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaa 320  Q
    ||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||| ||||    
T  30945022 gtctttcccttagtggtagctccatctaacagatagctcttttctctcgactaaaaaaaaaaa 30944960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 30943989 - 30943933
Alignment:
Q  258 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 314  Q
    ||||| ||||||||||| ||| ||||||||  ||| |||||||||||||| ||||||    
T  30943989 gtctttcccttagtggtagctccatctaacggatagctcttttctctcgactcaaaa 30943933  T

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