View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7771_low_12 (Length: 333)

Name: NF7771_low_12
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7771_low_12
NF7771_low_12
[»] chr8 (5 HSPs)
chr8 (126-257)||(35153622-35153753)
chr8 (62-110)||(35943838-35943886)
chr8 (9-44)||(2116536-2116571)
chr8 (62-101)||(37562296-37562335)
chr8 (68-110)||(7054097-7054139)
[»] chr7 (14 HSPs)
chr7 (67-238)||(35612791-35612962)
chr7 (62-110)||(40320409-40320457)
chr7 (62-109)||(40258734-40258781)
chr7 (1-44)||(45657725-45657768)
chr7 (62-111)||(42607082-42607131)
chr7 (62-110)||(29060738-29060786)
chr7 (63-109)||(24996683-24996729)
chr7 (66-115)||(25137417-25137465)
chr7 (66-115)||(33686931-33686979)
chr7 (62-110)||(32548672-32548720)
chr7 (91-146)||(35613206-35613262)
chr7 (67-111)||(39045237-39045280)
chr7 (62-110)||(40257468-40257516)
chr7 (67-107)||(44540994-44541034)
[»] chr5 (18 HSPs)
chr5 (85-314)||(2523216-2523452)
chr5 (62-110)||(35262453-35262501)
chr5 (91-238)||(34306456-34306599)
chr5 (62-110)||(32944483-32944531)
chr5 (68-110)||(32943524-32943566)
chr5 (66-115)||(24027192-24027240)
chr5 (62-110)||(9923389-9923437)
chr5 (67-111)||(35263307-35263351)
chr5 (66-132)||(8320880-8320945)
chr5 (62-108)||(26712389-26712435)
chr5 (62-108)||(26982127-26982173)
chr5 (66-115)||(3595782-3595830)
chr5 (66-115)||(7858332-7858380)
chr5 (66-115)||(8321382-8321430)
chr5 (66-115)||(12330657-12330705)
chr5 (62-110)||(4789521-4789569)
chr5 (66-110)||(12330153-12330196)
chr5 (144-188)||(33686383-33686427)
[»] chr1 (13 HSPs)
chr1 (67-238)||(17151750-17151921)
chr1 (62-103)||(2687733-2687774)
chr1 (67-146)||(17151008-17151086)
chr1 (66-115)||(32538497-32538545)
chr1 (62-109)||(4640529-4640576)
chr1 (62-109)||(4641762-4641809)
chr1 (68-109)||(29334221-29334262)
chr1 (66-115)||(38468911-38468959)
chr1 (68-109)||(43316364-43316405)
chr1 (66-115)||(43755854-43755902)
chr1 (68-109)||(50950152-50950193)
chr1 (62-110)||(48835096-48835144)
chr1 (74-110)||(51248520-51248556)
[»] chr3 (11 HSPs)
chr3 (169-237)||(53975472-53975539)
chr3 (126-257)||(53981255-53981385)
chr3 (62-102)||(33454867-33454907)
chr3 (67-110)||(49161807-49161850)
chr3 (66-115)||(5113203-5113251)
chr3 (66-115)||(20586077-20586125)
chr3 (66-115)||(20586579-20586627)
chr3 (66-115)||(26006151-26006199)
chr3 (62-110)||(33455780-33455828)
chr3 (3-39)||(44430083-44430119)
chr3 (62-110)||(53714415-53714463)
[»] chr4 (17 HSPs)
chr4 (68-110)||(38009291-38009333)
chr4 (62-110)||(33370874-33370922)
chr4 (62-110)||(39870264-39870312)
chr4 (62-110)||(47326788-47326836)
chr4 (62-110)||(47341584-47341632)
chr4 (74-109)||(31911468-31911503)
chr4 (68-107)||(32449324-32449363)
chr4 (9-44)||(39843572-39843607)
chr4 (68-110)||(33369916-33369958)
chr4 (66-115)||(5235379-5235427)
chr4 (66-115)||(20174975-20175023)
chr4 (62-111)||(25970107-25970156)
chr4 (62-110)||(22499099-22499147)
chr4 (62-110)||(36013951-36013999)
chr4 (67-111)||(38010846-38010890)
chr4 (62-110)||(39429936-39429984)
chr4 (68-108)||(55514355-55514395)
[»] chr2 (7 HSPs)
chr2 (62-110)||(34617654-34617702)
chr2 (66-115)||(6609556-6609604)
chr2 (66-132)||(6610021-6610086)
chr2 (66-132)||(15562018-15562083)
chr2 (66-115)||(16903892-16903940)
chr2 (66-115)||(30899395-30899443)
chr2 (66-115)||(30899896-30899944)
[»] scaffold0069 (1 HSPs)
scaffold0069 (3-44)||(36018-36059)
[»] chr6 (8 HSPs)
chr6 (62-103)||(16764926-16764967)
chr6 (62-111)||(25067848-25067897)
chr6 (62-173)||(28975341-28975451)
chr6 (62-110)||(34035043-34035091)
chr6 (66-115)||(7635129-7635177)
chr6 (66-115)||(18290490-18290538)
chr6 (65-110)||(34034172-34034217)
chr6 (62-110)||(16766014-16766062)
[»] scaffold0508 (1 HSPs)
scaffold0508 (66-115)||(4138-4186)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 35153622 - 35153753
Alignment:
Q  126 gattaaagaggtacactgatcatattatagtatgcccacaccatatatcttctcactttgtcttcaacttcactactgtcaccctccttttcaccaccac 225  Q
    |||| ||||| |||||||||| |||||| || | |||||||  ||||||||| |||||| |||||||| ||||| |  ||||||||||||||||||||||    
T  35153622 gattgaagagatacactgatcttattatggtctacccacactgtatatcttcccactttatcttcaacctcacttccatcaccctccttttcaccaccac 35153721  T
Q  226 caccaaactcaagccatggttcattgtactcc 257  Q
    ||||||||||||  || ||||||| |||||||    
T  35153722 caccaaactcaaatcaaggttcatcgtactcc 35153753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 35943886 - 35943838
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  35943886 gtggggtttagcatgggaaaggagaattgtttcccactatggaaaagtt 35943838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 2116571 - 2116536
Alignment:
Q  9 gagaaatatagtaaatttgatgtgttgtttgttata 44  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2116571 gagaaatatagtagatttgatgtgttgtttgttata 2116536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 37562296 - 37562335
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccat 101  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  37562296 gtggggtttagcatgggaaaggagaattgtttcccaccat 37562335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 7054097 - 7054139
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||||||||| ||| | |||||||||||||||||||||||    
T  7054097 tttagcatgggaatggagagttgtttcccaccatggaaaagtt 7054139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 35612791 - 35612962
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaagaggtacactgatcatattatag---tatgccca 163  Q
    ||||||||||||||||| | ||| ||||||||||||||||| || |||| | || ||   |||||||||||||||||||| ||| ||||   |||  |||    
T  35612791 gtttagcatgggaaaggctgatt-tttcccaccatggaaaaattagtttttgacaactgaattaaagaggtacactgatcttatcataggcttat--cca 35612887  T
Q  164 caccatatatcttctcactttgtcttcaacttcactactgtcaccctccttttcaccaccaccaccaaactcaag 238  Q
     || |||||||||| ||||||||||||||  |||||||  ||| ||||||||||||||||||| |||||||||||    
T  35612888 tactatatatcttcccactttgtcttcaatctcactaccatcatcctccttttcaccaccaccgccaaactcaag 35612962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 40320457 - 40320409
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  40320457 gtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagtt 40320409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 40258781 - 40258734
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    |||||||||||||||||||| |||||||||||| |||||||| |||||    
T  40258781 gtggagtttagcatgggaaatgataattgtttctcaccatgggaaagt 40258734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45657768 - 45657725
Alignment:
Q  1 taagaagagagaaatatagtaaatttgatgtgttgtttgttata 44  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  45657768 taagaagtgagaaatatagtagatttgatgtgttgtttgttata 45657725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 42607082 - 42607131
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    |||| |||||||||||||||||  |||||||||||||||||| |||||||    
T  42607082 gtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagttg 42607131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 29060786 - 29060738
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||  |||||||||||||||||| ||||||    
T  29060786 gtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtt 29060738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 24996729 - 24996683
Alignment:
Q  63 tggagtttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||    
T  24996729 tggagtttagcatgggaaaggggagttgtttcccaccatgggaaagt 24996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 25137417 - 25137465
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  25137417 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 25137465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 33686931 - 33686979
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  33686931 agtttagcatgggaaaggttaatt-tttcccaccatgggaaagttagttt 33686979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 32548720 - 32548672
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||| |||||||| |||| |||||||||||||||| ||||||    
T  32548720 gtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagtt 32548672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 35613262 - 35613206
Alignment:
Q  91 tttcccaccatggaaaagttggtttattaccacaaga-ttaaagaggtacactgatc 146  Q
    |||||||||||||||||||| |||| | ||||| ||| |||||||||||| ||||||    
T  35613262 tttcccaccatggaaaagttagtttttgaccactagatttaaagaggtaccctgatc 35613206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 39045280 - 39045237
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    ||||||||||||||||| || || |||||||||||||||||||||    
T  39045280 gtttagcatgggaaaggctactt-tttcccaccatggaaaagttg 39045237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 40257468 - 40257516
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||| |||||||||||| ||||| |||| ||||||| ||||||    
T  40257468 gtggagtttaacatgggaaaggagaattgcttccgaccatggtaaagtt 40257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 44540994 - 44541034
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaa 107  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  44540994 gtttagcatgggaaaggagagttgtttcccaccatgaaaaa 44541034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 314
Target Start/End: Complemental strand, 2523452 - 2523216
Alignment:
Q  85 taattgtttcccaccatggaaaagttggtttattaccacaagattaaagaggtacactgatcatattatagtatgcccacaccatatatcttctcacttt 184  Q
    ||||||||||||| |||   ||||||| ||||||||||| |||||||  ||||||| |||||||| |||||  || | | || |||||| || |||||||    
T  2523452 taattgtttcccaacataagaaagttgatttattaccactagattaagcaggtacattgatcatactataggttgtctatactatatattttttcacttt 2523353  T
Q  185 gtcttcaacttcactactgtca-----ccctccttttcaccaccaccaccaaactcaagccatggttcattgtactcc-nnnnnnnctctaataggc-cc 277  Q
    ||||||||| |||| ||   ||     ||||||||||||||||||||||||||||||||||| || ||||| ||||||        || |||||||| ||    
T  2523352 gtcttcaacctcaccaccaccatcctaccctccttttcaccaccaccaccaaactcaagccaaggctcattttactccaaaaaaaactttaataggcacc 2523253  T
Q  278 catagcttaggagcttcagctgccatgaatcataatc 314  Q
    ||| ||||||||||||||||| |||| |||| |||||    
T  2523252 cattgcttaggagcttcagctaccataaatcctaatc 2523216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 35262453 - 35262501
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35262453 gtggagtttagcatgggaaaggataattgtttcctaccatgggaaagtt 35262501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 34306456 - 34306599
Alignment:
Q  91 tttcccaccatggaaaagttggtttattaccacaagattaaagaggtacactgatcatattatagtatgcccacaccatatatcttctcactttgtcttc 190  Q
    |||||||||||| ||||||| |||| ||| ||   |||||||||| |||||||||     |||||| | || |||  |||||| ||  |||||| |||||    
T  34306456 tttcccaccatgaaaaagttagttttttatcattggattaaagagatacactgata----tatagtctacctacaatatatatttttccactttatcttc 34306551  T
Q  191 aacttcactactgtcaccctccttttcaccaccaccaccaaactcaag 238  Q
    ||| |||||||  || | ||||||||||||||||||||||||||||||    
T  34306552 aacctcactaccatctctctccttttcaccaccaccaccaaactcaag 34306599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 32944531 - 32944483
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  32944531 gtggggtttagcatgggaaatgatacttgtttcccaccatggaaaagtt 32944483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 32943524 - 32943566
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaagtt 32943566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 24027192 - 24027240
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  24027192 agtttagcatgggaaaggctaatt-tttcccaccatggaaaagttagttt 24027240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 9923389 - 9923437
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||| ||| | |||||||||||||||||||||||    
T  9923389 gtggggtttagcatgggaatggagagttgtttcccaccatggaaaagtt 9923437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 35263351 - 35263307
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  35263351 gtttagcatgggaaaggatagttgttttccatcatggaaaagttg 35263307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 8320880 - 8320945
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaa 132  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| |||| | ||||  ||||||||    
T  8320880 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagtttttaaccattagattaaa 8320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 26712435 - 26712389
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaag 108  Q
    ||||||||||||||||||||||  | |||||||||||||||| ||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaag 26712389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 26982173 - 26982127
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaag 108  Q
    ||||||||||||||||||||||  | |||||||||||||||| ||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaag 26982127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 3595782 - 3595830
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  3595782 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 3595830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 7858332 - 7858380
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  7858332 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 7858380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 8321430 - 8321382
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  8321430 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 8321382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 12330705 - 12330657
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  12330705 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 12330657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 4789521 - 4789569
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||  | |||||||||||||||| ||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagtt 4789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 12330153 - 12330196
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||    
T  12330153 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagtt 12330196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 33686427 - 33686383
Alignment:
Q  144 atcatattatagtatgcccacaccatatatcttctcactttgtct 188  Q
    ||||||||||||| ||||||||  |||||| ||||||||||||||    
T  33686427 atcatattatagtctgcccacataatatattttctcactttgtct 33686383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 17151921 - 17151750
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaagaggtacactgatcatattatagtatg-cccaca 165  Q
    ||||||||||||||||  || || ||| ||||||||| |||||| |||| | ||||  ||||||||||||||||| |||| ||| ||||  |  |||| |    
T  17151921 gtttagcatgggaaagc-tactttttttccaccatgggaaagttagtttttgaccattagattaaagaggtacaccgatcttatcataggcttacccata 17151823  T
Q  166 ccatatatcttctcactttgtcttcaacttcactactgtcaccctccttttcaccaccaccaccaaactcaag 238  Q
    | |||||||||| |||| |||||||||| |||||||  ||| ||||||||||||||||||  |||||||||||    
T  17151822 ctatatatcttcccactctgtcttcaacctcactaccatcatcctccttttcaccaccactgccaaactcaag 17151750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 2687774 - 2687733
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatgg 103  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  2687774 gtggggtttagcatgggaaaggataattgtttcccaccatgg 2687733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 17151008 - 17151086
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaagaggtacactgatc 146  Q
    ||||||||||||||||| |  || ||||||||||||| ||||||  ||| | ||||| ||||||||||||||||||||||    
T  17151008 gtttagcatgggaaaggctggtt-tttcccaccatgggaaagttattttttgaccactagattaaagaggtacactgatc 17151086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 32538545 - 32538497
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  32538545 agtttagcatgggaaaggctaatt-tttcccaccatggaaaagttagttt 32538497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 4640529 - 4640576
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    |||||||||||||||| |||||  |||||||||||||||||| |||||    
T  4640529 gtggagtttagcatggtaaaggggaattgtttcccaccatgggaaagt 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 4641809 - 4641762
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    ||||||||||||||||||||||  ||||||||||||||| || |||||    
T  4641809 gtggagtttagcatgggaaaggggaattgtttcccaccaagggaaagt 4641762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 29334221 - 29334262
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    ||||||||||||| ||||| |||||||||||||||| |||||    
T  29334221 tttagcatgggaatggatagttgtttcccaccatgggaaagt 29334262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 38468911 - 38468959
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  38468911 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 38468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 43316364 - 43316405
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    ||||||||||||| ||||| |||||||||||||||| |||||    
T  43316364 tttagcatgggaatggatagttgtttcccaccatgggaaagt 43316405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 43755854 - 43755902
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  43755854 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 43755902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 50950152 - 50950193
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagt 109  Q
    |||||||||| || ||||| ||||||||||||||||||||||    
T  50950152 tttagcatggaaatggatagttgtttcccaccatggaaaagt 50950193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 48835144 - 48835096
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||  |||||||| ||||||||| ||||||    
T  48835144 gtggggtttagcatgggaaaggggaattgttttccaccatgggaaagtt 48835096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 51248556 - 51248520
Alignment:
Q  74 atgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  51248556 atgggaaaggttaattttttcccaccatggaaaagtt 51248520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 53975472 - 53975539
Alignment:
Q  169 tatatcttctcactttgtcttcaacttcactactgtcaccctccttttcaccaccaccaccaaactcaa 237  Q
    ||||||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  53975472 tatatcttcccactttatcttcaacctcactactatcacc-tccttttcaccaccaccaccaaactcaa 53975539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 53981385 - 53981255
Alignment:
Q  126 gattaaagaggtacactgatcatattatagtatgcccacaccatatatcttctcactttgtcttcaacttcactactgtcaccctccttttcaccaccac 225  Q
    |||| ||||| |||||||||  |||||| || | | ||||| |||||||||  |||||| |||||||| ||||| |  ||||| ||||||||||||||||    
T  53981385 gattgaagagatacactgattttattatggtctactcacactatatatctttccactttatcttcaacctcacttccatcacc-tccttttcaccaccac 53981287  T
Q  226 caccaaactcaagccatggttcattgtactcc 257  Q
    ||||||||||||  || ||||||| |||||||    
T  53981286 caccaaactcaaatcaaggttcatcgtactcc 53981255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 33454867 - 33454907
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatg 102  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  33454867 gtggggtttagcatgggaaaggaaaattgtttcccaccatg 33454907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 49161850 - 49161807
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||||||  |||||||||||||||||| ||||||    
T  49161850 gtttagcatgggaaaggggaattgtttcccaccatgggaaagtt 49161807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 5113203 - 5113251
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  5113203 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 5113251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 20586077 - 20586125
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  20586077 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 20586125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 20586627 - 20586579
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  20586627 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 20586579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 26006151 - 26006199
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  26006151 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 26006199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 33455828 - 33455780
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||  |||||||||||||||| | ||||||    
T  33455828 gtggggtttagcatgggaaaggggaattgtttcccaccataggaaagtt 33455780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 44430083 - 44430119
Alignment:
Q  3 agaagagagaaatatagtaaatttgatgtgttgtttg 39  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  44430083 agaagagagaaatatagtagatttgatgtattgtttg 44430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 53714463 - 53714415
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||||||||||||||||||  |||| |||||||| |||| ||||||    
T  53714463 gtggagtttagcatgggaaagggaaattctttcccactatgggaaagtt 53714415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 38009291 - 38009333
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38009291 tttagcatgggaaaggataattgtttcccaccatggaaaagtt 38009333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 33370922 - 33370874
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||||||    
T  33370922 gtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagtt 33370874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 39870312 - 39870264
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||||||||||||||||| | | ||||||||||||||||| |||||    
T  39870312 gtggagtttagcatgggaaagaaaagttgtttcccaccatggagaagtt 39870264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 47326836 - 47326788
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||| ||||||||||||||| | |||||||||||||||| ||||||    
T  47326836 gtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagtt 47326788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 47341632 - 47341584
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||| ||||||||||||||| | |||||||||||||||| ||||||    
T  47341632 gtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagtt 47341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 31911503 - 31911468
Alignment:
Q  74 atgggaaaggataattgtttcccaccatggaaaagt 109  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31911503 atgggaaaggatatttgtttcccaccatggaaaagt 31911468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 32449324 - 32449363
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaa 107  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  32449324 tttagtatgggaaaggatacttgtttcccaccatggaaaa 32449363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 39843607 - 39843572
Alignment:
Q  9 gagaaatatagtaaatttgatgtgttgtttgttata 44  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39843607 gagaaatatagtagatttgatgtgttgtttgttata 39843572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 33369916 - 33369958
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||| |||| |||||||||||||||| ||||||    
T  33369916 tttagcatgggaaatgatatttgtttcccaccatgggaaagtt 33369958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 5235379 - 5235427
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  5235379 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 5235427  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 20174975 - 20175023
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  20174975 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 20175023  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 25970107 - 25970156
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    |||| |||||||||||||||||  | |||||||||||||||| |||||||    
T  25970107 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagttg 25970156  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 22499099 - 22499147
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||| |||||||||||| |||||||| ||| ||||| ||||||    
T  22499099 gtggagtttaacatgggaaaggagaattgttttccatcatgggaaagtt 22499147  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 36013999 - 36013951
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||||||||||||| || | |||||| ||||||||| ||||||    
T  36013999 gtggagtttagcatgggaaatgaaagttgtttaccaccatgggaaagtt 36013951  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 38010890 - 38010846
Alignment:
Q  67 gtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  38010890 gtttagcatgggaaaggatatttgttttccatcatgggaaagttg 38010846  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 39429984 - 39429936
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||| ||| | |||||||||||||||| ||||||    
T  39429984 gtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtt 39429936  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 55514395 - 55514355
Alignment:
Q  68 tttagcatgggaaaggataattgtttcccaccatggaaaag 108  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaag 55514355  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 34617654 - 34617702
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  34617654 gtggggtttagcatgggaaaggataattgtttcccaccatgggaaagtt 34617702  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 6609556 - 6609604
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  6609556 agtttagcatgggaaaggctaatt-tttcccaccatggaaaagttagttt 6609604  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 6610086 - 6610021
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaa 132  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| |||| | ||||  ||||||||    
T  6610086 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagtttttaaccattagattaaa 6610021  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 15562083 - 15562018
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttattaccacaagattaaa 132  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| |||| | ||||  ||||||||    
T  15562083 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagtttttaaccattagattaaa 15562018  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 16903940 - 16903892
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  16903940 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 16903892  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 30899395 - 30899443
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  30899395 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 30899443  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 30899944 - 30899896
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||| ||||    
T  30899944 agtttagcatgggaaaggctaatt-tttcccaccatgaaaaagttagttt 30899896  T

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Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 36018 - 36059
Alignment:
Q  3 agaagagagaaatatagtaaatttgatgtgttgtttgttata 44  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  36018 agaagagagaaatagagtaaatttgatgtgttgtttggtata 36059  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 16764926 - 16764967
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatgg 103  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  16764926 gtggagtttagcatgggaaaggaaagttgtttcccaccatgg 16764967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 25067897 - 25067848
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagttg 111  Q
    |||| |||||||||||||||||||| |||||||||||||| | |||||||    
T  25067897 gtggggtttagcatgggaaaggatatttgtttcccaccataggaaagttg 25067848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 28975341 - 28975451
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagttggtttatt--accacaagattaaagaggtacactgatcatattatagtatg 159  Q
    |||| |||||||||||||||||| | |||||||| | |||||||||||   ||||||  ||||   ||| ||||||| ||| ||||||||||||||| ||    
T  28975341 gtggggtttagcatgggaaaggagagttgtttcctatcatggaaaagt---tttatttaaccatttgatcaaagaggaacattgatcatattatagtctg 28975437  T
Q  160 cccacaccatatat 173  Q
    |||| | |||||||    
T  28975438 cccatatcatatat 28975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 34035091 - 34035043
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||||||||| |||||||||||| |||||||||||| ||||| ||||||    
T  34035091 gtggagtttaacatgggaaaggagaattgtttcccatcatgggaaagtt 34035043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 7635129 - 7635177
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  7635129 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 7635177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 18290538 - 18290490
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  18290538 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 18290490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 34034172 - 34034217
Alignment:
Q  65 gagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    ||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  34034172 gagtttaacatgggaaaggagaattgcttcccaccatgggaaagtt 34034217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 16766062 - 16766014
Alignment:
Q  62 gtggagtttagcatgggaaaggataattgtttcccaccatggaaaagtt 110  Q
    |||| |||||||||||||||| | | |||||| ||||||||||||||||    
T  16766062 gtggggtttagcatgggaaagaaaagttgttttccaccatggaaaagtt 16766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 4138 - 4186
Alignment:
Q  66 agtttagcatgggaaaggataattgtttcccaccatggaaaagttggttt 115  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||| ||||    
T  4138 agtttagcatgggaaaggctaatt-tttcccaccatgggaaagttagttt 4186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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