View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_low_18 (Length: 244)
Name: NF7771_low_18
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 43950378 - 43950558
Alignment:
| Q |
47 |
aacagaatatggaaaattaatatatgaaattcaatctaggaagnnnnnnnnnnnnnncctgtattctttgtaacgatcaaaggagtcgccactccaacct |
146 |
Q |
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| T |
43950378 |
aacagaatatggaaaattaatatatgaaattcaatataggaagaaaaagaaaaaaaacctgtattctttgtaacgatcaaaggagtcgccactccaacct |
43950477 |
T |
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| Q |
147 |
tgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccacttcgcttattcggaatcctaacgcaaccttc |
227 |
Q |
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| T |
43950478 |
tgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccacttcgcttattcggaatcctaacgcaaccttc |
43950558 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 35145692 - 35145784
Alignment:
| Q |
104 |
cctgtattctttgtaacgatcaaaggagtcgccactccaaccttgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccac |
196 |
Q |
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| T |
35145692 |
cctgtattctttataacgatcataagagtctccactccaaccttgcgtcttattcgcagccataactgaaaacgaaatcaaacaaaccaccac |
35145784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 46510202 - 46510240
Alignment:
| Q |
5 |
gtttcgtgttttgccattagtagtaaaaagtatttccca |
43 |
Q |
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| T |
46510202 |
gtttcgtgttttgccattcgtagtaaaaagtatttccca |
46510240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 2555605 - 2555567
Alignment:
| Q |
5 |
gtttcgtgttttgccattagtagtaaaaagtatttccca |
43 |
Q |
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| T |
2555605 |
gtttcgtgttttgccattcgtagtaaaaagtatttccca |
2555567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 41125694 - 41125657
Alignment:
| Q |
5 |
gtttcgtgttttgccattagtagtaaaaagtatttccc |
42 |
Q |
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| T |
41125694 |
gtttcgtgttttgccattcgtagtaaaaaatatttccc |
41125657 |
T |
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