View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_low_20 (Length: 237)
Name: NF7771_low_20
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 6030518 - 6030723
Alignment:
| Q |
13 |
gtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtgtcttactgctatactatttttcaaaagtgaaggacaaag |
112 |
Q |
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| T |
6030518 |
gtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtgtcttactgctact-tattttacaaaagtgaaggacaaag |
6030616 |
T |
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| Q |
113 |
aaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgcattactttcattgttttcctgccttctatgctactactg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6030617 |
aaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgcattactttcattgttttccttccttctatgctactactg |
6030716 |
T |
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| Q |
213 |
catttac |
219 |
Q |
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||||||| |
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| T |
6030717 |
catttac |
6030723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 5570099 - 5570141
Alignment:
| Q |
173 |
cattactttcattgttttcctgccttctatgctactactgcat |
215 |
Q |
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| T |
5570099 |
cattagtttcattgttttccttccttctatgctactactgcat |
5570141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 5851976 - 5852033
Alignment:
| Q |
161 |
caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcattta |
218 |
Q |
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| T |
5851976 |
caatgagaattacattacttccattgttttccttcattctctgctactactgcattta |
5852033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 23268652 - 23268603
Alignment:
| Q |
168 |
aattgcattactttcattgttttcctgccttctatgctactactgcattt |
217 |
Q |
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|||| ||||||||||||||||||||| |||| | ||| |||||||||||| |
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| T |
23268652 |
aattacattactttcattgttttccttccttttctgccactactgcattt |
23268603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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