View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7771_low_21 (Length: 232)

Name: NF7771_low_21
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7771_low_21
NF7771_low_21
[»] chr5 (25 HSPs)
chr5 (26-229)||(37030551-37030754)
chr5 (29-138)||(26278764-26278872)
chr5 (29-163)||(12723369-12723503)
chr5 (29-163)||(16513899-16514033)
chr5 (64-163)||(5344073-5344172)
chr5 (62-163)||(37883125-37883226)
chr5 (55-158)||(9715624-9715727)
chr5 (29-163)||(18808677-18808811)
chr5 (64-163)||(29047356-29047455)
chr5 (29-139)||(25977431-25977541)
chr5 (29-97)||(8301068-8301136)
chr5 (64-163)||(1711550-1711649)
chr5 (29-163)||(12784852-12784986)
chr5 (64-163)||(13822412-13822511)
chr5 (53-163)||(8197106-8197216)
chr5 (62-160)||(2606321-2606419)
chr5 (44-163)||(27114002-27114121)
chr5 (69-158)||(8551245-8551334)
chr5 (182-226)||(525091-525135)
chr5 (99-163)||(6432777-6432841)
chr5 (111-163)||(32746562-32746614)
chr5 (72-163)||(37012564-37012655)
chr5 (43-93)||(22912086-22912136)
chr5 (62-163)||(8734393-8734492)
chr5 (29-97)||(15858651-15858719)
[»] chr4 (34 HSPs)
chr4 (29-158)||(38551568-38551697)
chr4 (27-163)||(28311189-28311325)
chr4 (29-159)||(16451638-16451768)
chr4 (29-163)||(35320195-35320329)
chr4 (29-163)||(45228788-45228922)
chr4 (26-163)||(49374022-49374159)
chr4 (29-163)||(35158416-35158551)
chr4 (29-163)||(45924302-45924437)
chr4 (29-163)||(2016092-2016225)
chr4 (29-163)||(52417239-52417372)
chr4 (29-163)||(4190174-4190308)
chr4 (52-160)||(15543164-15543272)
chr4 (29-163)||(45029326-45029460)
chr4 (29-160)||(51538346-51538477)
chr4 (29-163)||(9036405-9036538)
chr4 (29-162)||(28781076-28781209)
chr4 (29-148)||(27283660-27283779)
chr4 (29-163)||(40727723-40727857)
chr4 (53-163)||(55136364-55136474)
chr4 (62-141)||(168882-168961)
chr4 (65-163)||(45458039-45458137)
chr4 (29-97)||(30003375-30003443)
chr4 (64-163)||(44107840-44107939)
chr4 (29-154)||(4047846-4047971)
chr4 (29-162)||(16023572-16023705)
chr4 (29-149)||(31092818-31092938)
chr4 (29-160)||(1602490-1602618)
chr4 (64-120)||(47986013-47986069)
chr4 (29-97)||(56463947-56464015)
chr4 (64-163)||(16684578-16684677)
chr4 (64-163)||(40693314-40693413)
chr4 (29-122)||(43842183-43842276)
chr4 (113-157)||(38991027-38991071)
chr4 (182-226)||(41305534-41305577)
[»] chr8 (19 HSPs)
chr8 (29-163)||(20091265-20091399)
chr8 (27-163)||(6346999-6347135)
chr8 (29-163)||(29544104-29544236)
chr8 (29-158)||(32337516-32337645)
chr8 (29-136)||(13546489-13546596)
chr8 (29-136)||(13677877-13677984)
chr8 (29-163)||(40105554-40105688)
chr8 (29-163)||(43098845-43098978)
chr8 (62-160)||(37098099-37098197)
chr8 (29-163)||(32946776-32946911)
chr8 (64-162)||(12060-12158)
chr8 (29-162)||(8240293-8240426)
chr8 (29-149)||(627091-627211)
chr8 (29-162)||(39318901-39319034)
chr8 (29-121)||(23144408-23144499)
chr8 (29-122)||(586711-586804)
chr8 (64-159)||(42132206-42132301)
chr8 (64-162)||(23421283-23421381)
chr8 (29-87)||(39260598-39260655)
[»] chr2 (13 HSPs)
chr2 (31-162)||(13278394-13278525)
chr2 (63-158)||(18137299-18137394)
chr2 (29-163)||(45116783-45116916)
chr2 (43-158)||(7943056-7943169)
chr2 (53-163)||(38707544-38707654)
chr2 (31-163)||(17304589-17304721)
chr2 (64-154)||(43333528-43333618)
chr2 (29-158)||(31994377-31994505)
chr2 (64-163)||(5464715-5464814)
chr2 (43-158)||(34906046-34906160)
chr2 (29-94)||(38207251-38207316)
chr2 (67-163)||(12287039-12287135)
chr2 (127-163)||(9634936-9634972)
[»] chr6 (9 HSPs)
chr6 (29-163)||(9305263-9305397)
chr6 (62-163)||(31318227-31318328)
chr6 (29-160)||(31271051-31271181)
chr6 (64-163)||(303452-303551)
chr6 (64-160)||(34949237-34949333)
chr6 (53-163)||(31723198-31723308)
chr6 (64-163)||(480021-480119)
chr6 (64-160)||(29435803-29435899)
chr6 (129-163)||(438743-438777)
[»] chr1 (32 HSPs)
chr1 (29-158)||(49851417-49851546)
chr1 (29-163)||(41900587-41900720)
chr1 (29-163)||(14587649-14587783)
chr1 (64-163)||(3475599-3475698)
chr1 (29-160)||(44496187-44496318)
chr1 (29-163)||(3517881-3518015)
chr1 (29-122)||(38860422-38860514)
chr1 (29-158)||(50262227-50262355)
chr1 (26-122)||(52632654-52632750)
chr1 (29-163)||(29961095-29961229)
chr1 (29-163)||(42882895-42883029)
chr1 (29-159)||(48965197-48965327)
chr1 (64-163)||(5750127-5750226)
chr1 (29-103)||(23984336-23984410)
chr1 (29-163)||(11952721-11952849)
chr1 (29-163)||(12700849-12700983)
chr1 (26-80)||(41086187-41086241)
chr1 (26-80)||(41090955-41091009)
chr1 (29-162)||(44757837-44757969)
chr1 (64-163)||(18271971-18272070)
chr1 (64-163)||(18276625-18276724)
chr1 (64-163)||(22335235-22335334)
chr1 (45-139)||(12528174-12528267)
chr1 (64-163)||(12525239-12525337)
chr1 (64-159)||(29947018-29947112)
chr1 (64-163)||(39597916-39598014)
chr1 (29-163)||(22858456-22858590)
chr1 (53-163)||(33801060-33801170)
chr1 (43-158)||(7564897-7565011)
chr1 (64-122)||(14270196-14270254)
chr1 (29-142)||(46597439-46597551)
chr1 (62-106)||(41723284-41723328)
[»] chr7 (16 HSPs)
chr7 (62-160)||(14816984-14817082)
chr7 (62-160)||(15263980-15264078)
chr7 (29-163)||(46254564-46254698)
chr7 (64-163)||(38257766-38257865)
chr7 (29-163)||(43457885-43458019)
chr7 (29-158)||(35794180-35794309)
chr7 (64-163)||(35585394-35585493)
chr7 (65-163)||(43269960-43270058)
chr7 (64-163)||(15032875-15032974)
chr7 (64-163)||(26791698-26791797)
chr7 (36-163)||(34848187-34848314)
chr7 (64-163)||(37998368-37998471)
chr7 (29-94)||(25529409-25529474)
chr7 (64-163)||(7255733-7255832)
chr7 (29-76)||(42321432-42321479)
chr7 (53-97)||(33950694-33950738)
[»] chr3 (22 HSPs)
chr3 (30-163)||(32529503-32529637)
chr3 (29-158)||(41194022-41194151)
chr3 (38-160)||(31765512-31765634)
chr3 (29-163)||(53814649-53814783)
chr3 (29-149)||(39353017-39353137)
chr3 (29-163)||(149025-149159)
chr3 (55-163)||(36403011-36403119)
chr3 (29-162)||(39586272-39586405)
chr3 (54-162)||(49440592-49440699)
chr3 (53-163)||(10509551-10509661)
chr3 (29-125)||(6936211-6936308)
chr3 (29-158)||(49166409-49166538)
chr3 (29-163)||(227329-227461)
chr3 (64-163)||(44207920-44208019)
chr3 (72-163)||(47646650-47646741)
chr3 (53-163)||(40936915-40937025)
chr3 (64-163)||(9126733-9126832)
chr3 (64-163)||(9134840-9134939)
chr3 (64-163)||(33186507-33186606)
chr3 (64-163)||(47375059-47375158)
chr3 (64-162)||(21450494-21450592)
chr3 (64-120)||(9116890-9116946)
[»] scaffold1301 (1 HSPs)
scaffold1301 (27-73)||(1449-1495)
[»] scaffold0168 (1 HSPs)
scaffold0168 (90-163)||(11901-11974)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 37030551 - 37030754
Alignment:
Q  26 gcgcataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggg 125  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  37030551 gcgcataacatctggtccggattttgttttccggatatcactaacaatctggtccggattatataatccggaccaggggtacttttggaaattttgcagg 37030650  T
Q  126 acacgcgagaaggcagcatggtggaaaaagtaatagtcnnnnnnnncccattgattgggggtgggtattggctataattttctttaggcccgtcactttt 225  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37030651 acacgcgagaaggcagcatggtggaaaaagtaatagtcttttttttcccattgattgggggtgggtattggctataattttctttaggcccgtcactttt 37030750  T
Q  226 gatg 229  Q
    ||||    
T  37030751 gatg 37030754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 26278872 - 26278764
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| | || |     
T  26278872 cataacatctggtccgaatttcgttttccggatatcactaacaatctggtccggattatataatccggaccaggggta-ttttagaaattttacagggcg 26278774  T
Q  129 cgcgagaagg 138  Q
    ||||||||||    
T  26278773 cgcgagaagg 26278764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 12723503 - 12723369
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||| ||||||| | |||||||| ||| | ||||||||| || |    
T  12723503 cataacatctggttcggatttctgttttc-ggaaatcactaacaatctgatccggattatgtaatccgaaccaggggtattttagtaaattttgcagggc 12723405  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     |||||| |||||||| ||||| |||||||||||||    
T  12723404 gcgcgaggaggcagcagggtgggaaaagtaatagtc 12723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 16513899 - 16514033
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    |||||||| |||| ||||||| ||||||| | | ||||||||||||||| |||||||||| ||||||||||||  |||| ||||||||||||||| || |    
T  16513899 cataacatatggtccggatttctgttttc-gaaaatcactaacaatctgatccggattatgtaatccggatcaaaggtatttttggaaattttgcagggc 16513997  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     ||||||||||||||| ||||| |||||||||||||    
T  16513998 gcgcgagaaggcagcagggtgggaaaagtaatagtc 16514033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 5344073 - 5344172
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  ||||||||| |||||||| || ||||| |||||| || | |||||||||||| |||||||| |||||||||||||    
T  5344073 cactaacaatctggtccggattacgtaatccggaccaggggtatttatggaatttttgcagggcgcgcgagaaggcaacatggtgggaaaagtaatagtc 5344172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 37883226 - 37883125
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatag 161  Q
    |||||||||||||||||||| ||||||||||||||| || || || ||||| ||||||||| || | ||||||||||||  | |||||||||||||||||    
T  37883226 atcactaacaatctggtccgcattatataatccggaccatggttatttttgaaaattttgcagggcgcgcgagaaggcaatagggtggaaaaagtaatag 37883127  T
Q  162 tc 163  Q
    ||    
T  37883126 tc 37883125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 9715624 - 9715727
Alignment:
Q  55 tccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaa 154  Q
    |||||| |||||||||||||||||| |||||||||||| |||| |||||||| |||   |||| |||| |||| ||||||||||||||| |||| |||||    
T  9715624 tccggaaatcactaacaatctggtctggattatataattcggaccaggggtattttcaaaaatattgcaggacgcgcgagaaggcagcagggtgaaaaaa 9715723  T
Q  155 gtaa 158  Q
    ||||    
T  9715724 gtaa 9715727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 18808811 - 18808677
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || ||||   ||||| || ||||||||||||||| |||||||||| ||||| ||| || ||||| ||| | ||||||||| || |     
T  18808811 cataacatctggtccgaatttctatttccagaaatcactaacaatctgatccggattatgtaatctggaccaagggtattttagtaaattttgcagggcg 18808712  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    || ||| |||||||||||||| |||||||||||||    
T  18808711 cgtgaggaggcagcatggtgggaaaagtaatagtc 18808677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 29047356 - 29047455
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||| |||||||||||||| ||  ||||||||| |||||||| |||||||| |||||| || | |||||||||||| || ||||| |||||||||||||    
T  29047356 cactagcaatctggtccggaatacgtaatccggaccaggggtatttttggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagtc 29047455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 25977431 - 25977541
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||| | | ||||| ||||||||| |||||||||||||||| | |||||||||||||||  | |||||||| ||||| ||||||| | || |     
T  25977431 cataacatctgatcctgatttcgttttccgggtatcactaacaatctgctacggattatataatccaaaccaggggtatttttgtaaattttacagggcg 25977530  T
Q  129 cgcgagaaggc 139  Q
    |||||||||||    
T  25977531 cgcgagaaggc 25977541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 8301068 - 8301136
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccgga 97  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  8301068 cataacatctggttcggatttctgtttt-cggaaatcactaacaatctgatccggattatataatccgga 8301136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 1711550 - 1711649
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||| |||||  ||||||||| |||||||| || || || |||||| || | || ||||||||| |||||||| |||||||||||||    
T  1711550 cactaacaatctggtcctgattacgtaatccggaccaggggtatttatgaaatttttgcagggcgcgtgagaaggcaacatggtgggaaaagtaatagtc 1711649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 12784986 - 12784852
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||||||||||| |||||| |||| ||||||||| ||| | |||||||||| ||||||| | |||||||| ||| | ||||  ||| ||      
T  12784986 cataacatctggttcggatttctgtttt-cggaaatcactaaccatccgatccggattatgtaatccgaaccaggggtattttagtaaatggtgcagggt 12784888  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     |||||| |||||||| ||||| |||||||||||||    
T  12784887 gcgcgaggaggcagcagggtgggaaaagtaatagtc 12784852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 13822412 - 13822511
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||| |||| ||||||||||  ||||||||| |||||||| ||| | ||||||||| || | |||||| |||||||| ||||| |||||||||||||    
T  13822412 cactaactatctagtccggattacgtaatccggaccaggggtattttagtaaattttgcagggcgcgcgaggaggcagcaaggtgggaaaagtaatagtc 13822511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 8197216 - 8197106
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||||| |||||||||||||||||||||||||| ||||||  | ||| |||| ||| | ||||||||| |  |  |||||||||||||  ||||| ||    
T  8197216 tttccggaaatcactaacaatctggtccggattatgtaatccaaaccagaggtattttagtaaattttgcagagcgtgcgagaaggcagcggggtgggaa 8197117  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  8197116 aagtaatagtc 8197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 2606321 - 2606419
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    ||||||||||||| || || ||||||||||| |||| |||||||| ||||||||||||||   | | ||||||||||||  | ||||| ||||||||||    
T  2606321 atcactaacaatccggaccagattatataattcggaccaggggtatttttggaaattttggaaggcgcgcgagaaggcattaaggtgggaaaagtaata 2606419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 27114121 - 27114002
Alignment:
Q  44 ggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagca 143  Q
    |||||| || ||||| | |||||||||||||||||||||| |||||||| | ||  || |||| ||||| ||||||| |  ||||||| |||||||| ||    
T  27114121 ggatttcgtattccgaaaatcactaacaatctggtccggaatatataattcagacaagaggtatttttgaaaattttacaagacacgcaagaaggcaaca 27114022  T
Q  144 tggtggaaaaagtaatagtc 163  Q
      |||| |||| ||||||||    
T  27114021 gagtgggaaaaataatagtc 27114002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 8551245 - 8551334
Alignment:
Q  69 acaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||| || ||||||||| |||||||||| || ||||| || |||||| || |  || ||||||||||| ||||| ||||||||    
T  8551245 acaatctggtctggtttatataattcggatcagggatatttttgaaatttttgcagggcgtgcaagaaggcagcagggtgggaaaagtaa 8551334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 525091 - 525135
Alignment:
Q  182 gggggtgggtattggctataattttctttaggcccgtcacttttg 226  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||    
T  525091 gggggtgggtattggcaataattttttttagacccgtcacttttg 525135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 6432777 - 6432841
Alignment:
Q  99 caggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||| || |||||| |||| ||||||||||||  | ||||| |||||||||||||    
T  6432777 caggggtagttttgaaatttttgcaggacgcgcgagaaggcaagagggtgggaaaagtaatagtc 6432841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 32746614 - 32746562
Alignment:
Q  111 tggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||| |||||| || |||||||||||||| || |||||||||||||||||||    
T  32746614 tggaatttttgcagggcacgcgagaaggcaacagggtggaaaaagtaatagtc 32746562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 37012655 - 37012564
Alignment:
Q  72 atctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||  |||||||| |||||||| |||   ||||||||| || | ||||| ||||||||| ||||  |||| ||||||||    
T  37012655 atctggtccggattatgcaatccggaccaggggtattttaataaattttgcagggcgcgcgaaaaggcagcaaggtgagaaaaataatagtc 37012564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 22912086 - 22912136
Alignment:
Q  43 cggattttgttttccggatatcactaacaatctggtccggattatataatc 93  Q
    ||||||||||||| |||| ||| ||||||||||||| ||||||| ||||||    
T  22912086 cggattttgtttttcggaaatctctaacaatctggttcggattacataatc 22912136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 8734492 - 8734393
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatag 161  Q
    ||||||||||||||  |||||||||| ||||||||| ||||  || ||| | ||||||| | |||  |||||||||| ||||  ||||||||||||||||    
T  8734492 atcactaacaatctaatccggattatgtaatccggaccaggaatattttagtaaattttacaggatgcgcgagaagg-agca-cgtggaaaaagtaatag 8734395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 15858719 - 15858651
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccgga 97  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||||  |||||||| | |||||||||    
T  15858719 cataacatctggttcgaatttctgttttc-ggaaatcactaacaatctaatccggattgtgtaatccgga 15858651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 38551568 - 38551697
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || |||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |     
T  38551568 cataacatctggtccgtatttcgttttccgaaaatcactaacaatctggtccggattatataatccggaccaggggtatttttggaaattttgcagggcg 38551667  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||||||| ||||| ||||||||    
T  38551668 cgcgagaaggcagcagggtgggaaaagtaa 38551697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 28311189 - 28311325
Alignment:
Q  27 cgcataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggga 126  Q
    ||||||||||||||| ||||||   ||||||  | |||||||||||||||||||||||||||| ||||| | |||||||| |||| |||||||||| |||    
T  28311189 cgcataacatctggtccggattaaattttccaaaaatcactaacaatctggtccggattatattatccgaaccaggggtaatttttgaaattttgcagga 28311288  T
Q  127 cacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    | ||||||||||||||| ||||| |||||||||||||    
T  28311289 cgcgcgagaaggcagcagggtgggaaaagtaatagtc 28311325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 16451768 - 16451638
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||| |  |     
T  16451768 cataacatctggtctggattttgttttccgaaaatcactaacaatctggtccggattatataatccagaccaagggtatttttgaaaattttgcagagcg 16451669  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaat 159  Q
    ||||||||||||||| ||||| |||||||||    
T  16451668 cgcgagaaggcagcagggtgggaaaagtaat 16451638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 35320195 - 35320329
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||| | |  |||  | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |     
T  35320195 cataacatctggtccggattatataatccaaaaatcactaacaatctggtccggattatataatccggaccaggggtatttttggaaattttgcagggcg 35320294  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||| || ||||| |||||||||||||    
T  35320295 cgcgagaaggcaccaaggtggtaaaagtaatagtc 35320329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 45228922 - 45228788
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| ||||||||  |||||| | |||||||||||||||||||||||||| |||||  ||||| ||||| ||| | ||||||||| || |     
T  45228922 cataacatctggtccggatttttgtttccgaaaatcactaacaatctggtccggattatgtaatcatgatcaagggtattttagtaaattttgcagggcg 45228823  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||| ||||| |||||||||||||||||||    
T  45228822 cgcgagaagacagcagggtggaaaaagtaatagtc 45228788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 49374159 - 49374022
Alignment:
Q  26 gcgcataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggg 125  Q
    ||||||||||| |||| ||||||||||||| |||  |||| ||||||||| ||||||||| ||||||| ||| |||||||| ||||| ||||||||| ||    
T  49374159 gcgcataacatatggtccggattttgtttttcggggatcattaacaatctcgtccggattgtataatctggaccaggggtatttttgaaaattttgcagg 49374060  T
Q  126 acacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     | |||||||||| |||| ||||| |||||||||||||    
T  49374059 gcgcgcgagaaggtagcagggtgggaaaagtaatagtc 49374022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 35158551 - 35158416
Alignment:
Q  29 cataacatctggttcggattttgt-tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| || ||||| | |||||||| || ||||||||||||||||||||||| ||||||||| |||||||| ||| | ||||||||| || |    
T  35158551 cataacatctggtccgaattttctgtttccggaaataactaacaatctggtccggattatgtaatccggaccaggggtattttagtaaattttgcagggc 35158452  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     |||||| |||||||| ||||| |||||||||||||    
T  35158451 gcgcgaggaggcagcagggtgggaaaagtaatagtc 35158416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 45924437 - 45924302
Alignment:
Q  29 cataacatctggttcggattttgttttccggata-tcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| || ||||  | ||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| ||||  |||||||||  | |    
T  45924437 cataacatctggtccgaatttaatgttccggaaaatcactaacaatttggtccggattatataatccggaccaggggtatttttaaaaattttgcatggc 45924338  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     |||||||||||||||  ||||||||||||||||||    
T  45924337 gcgcgagaaggcagcagagtggaaaaagtaatagtc 45924302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 2016092 - 2016225
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||  | || ||||| ||||| ||||| ||  || |     
T  2016092 cataacatctggtccggatttcgttttccggatatcactaacaatctagtccggattatataatccataccatgggtatttttgtaaattatgtagg-cg 2016190  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||| ||||||||||| ||||| |||||| ||||||    
T  2016191 cgcaagaaggcagcagggtgggaaaagtgatagtc 2016225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 52417239 - 52417372
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||| |||| |||||||   |||||||| | |||||||||||||||||||||||  ||||||||| |||||||| ||| | ||||||||| || ||    
T  52417239 cataacatatggtccggatttctgtttccggaaa-cactaacaatctggtccggattacgtaatccggaccaggggtattttagtaaattttgcagggca 52417337  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||| | |||||||||||||    
T  52417338 cgcgagaaggcagcagggtaggaaaagtaatagtc 52417372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 4190174 - 4190308
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||| |||| || ||||  ||||||||| ||| |||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||  || |     
T  4190174 cataacatttggtccgaatttaattttccggaaatcgctaacaatctggtcaggattatataatccgaaccaggggtatttttggaaattttgaagggcg 4190273  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||| ||||| || || ||||| |||||||||||||    
T  4190274 cgcaagaagacaacagggtgggaaaagtaatagtc 4190308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 15543164 - 15543272
Alignment:
Q  52 ttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaa 151  Q
    ||||||| | |||||||||||||| ||| ||||||||||||| ||| || ||||| ||||||||||||||  || | ||||||||||||||| ||||| |    
T  15543164 ttttccgaaaatcactaacaatctagtctggattatataatctggaccatgggtatttttggaaattttgtagggcgcgcgagaaggcagcaaggtggga 15543263  T
Q  152 aaagtaata 160  Q
    |||||||||    
T  15543264 aaagtaata 15543272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 45029326 - 45029460
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| || |||| |||||| |||| ||||||||||||||| |||| ||||| |||||||||  ||||||| ||| | ||||||||| ||      
T  45029326 cataacatctggtccgaatttctgtttt-cggaaatcactaacaatctgatccgaattatgtaatccggactaggggtattttagtaaattttgcagggt 45029424  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     || |||||||||||| |||||||||||||||||||    
T  45029425 gcgggagaaggcagcagggtggaaaaagtaatagtc 45029460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 51538477 - 51538346
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   |||||||| |||||||||||||| ||||| ||||| ||||||||| ||||| || | | | ||||||||| || ||    
T  51538477 cataacatctggtccggatttctgtttccggaaatcactaacaatctagtccgaattatgtaatccggaccagggttattgtcgtaaattttgcagggca 51538378  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaata 160  Q
     |||||||||||||| ||||| |||| |||||    
T  51538377 tgcgagaaggcagcagggtgggaaaaataata 51538346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 9036405 - 9036538
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | |||||  | ||||||| ||||| ||||||||| |||||||||| ||||||||| |||||||| ||| | ||||||||| || |     
T  9036405 cataacatctggtccagatttc-tgttccggaaatcacgaacaatctgatccggattatgtaatccggaccaggggtattttagtaaattttgcagggcg 9036503  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| ||||||   |||||||||||||||||||    
T  9036504 cgcgaggaggcagtcgggtggaaaaagtaatagtc 9036538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 28781076 - 28781209
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   ||||| || ||||||||||||||||||||||||   ||||||||| |||||||| ||| | ||||||||| ||       
T  28781076 cataacatctggtccggatttctgtttccagaaatcactaacaatctggtccggattgcgtaatccggaccaggggtattttagtaaattttgcagggtg 28781175  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    | |||| |||||||||||||  ||||||||||||    
T  28781176 cacgaggaggcagcatggtgagaaaagtaatagt 28781209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 27283660 - 27283779
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  |||| |||| |||| ||||||||| || |||||||||||||||| | |||||||| ||| | ||||||||| || ||    
T  27283660 cataacatctggtccggatttaatttttcggaaatcattaacaatctagttcggattatataatccgaaccaggggtattttagaaaattttgcagggca 27283759  T
Q  129 cgcgagaaggcagcatggtg 148  Q
      ||||||||||||| ||||    
T  27283760 tacgagaaggcagcaaggtg 27283779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 40727857 - 40727723
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||||  ||||||   |||||| | ||||||||||||||||||| |||| ||||||||||| |||||||| ||| | ||||||||| ||  |    
T  40727857 cataacatctggtctggatttctgtttccgaaaatcactaacaatctggtccagattgtataatccggaccaggggtattttagtaaattttgcagggta 40727758  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     ||||| |||||||| ||||  ||||||| |||||    
T  40727757 tgcgaggaggcagcagggtgagaaaagtagtagtc 40727723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 55136474 - 55136364
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||| | ||||||||||||||| |||||||||| ||||||| |||||||||| ||| | ||||||||| ||   ||  || |||||||| ||||||||    
T  55136474 tttccgaaaatcactaacaatctgatccggattatgtaatccgaatcaggggtattttagtaaattttgcagggtgcgaaaggaggcagcagggtggaaa 55136375  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  55136374 aagtaatagtc 55136364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 168882 - 168961
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcag 141  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||  |||| ||||||||  || |||||||||||||||    
T  168882 atcactaacaatctggtccgaattatataatccgaaccaggggtatatttgaaaattttgtagggcacgcgagaaggcag 168961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 45458137 - 45458039
Alignment:
Q  65 actaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||| |||||||| |||||||| ||||||||| || ||||| ||| | |||||||||  | |||||||| |||||||| ||||| |||||||||||||    
T  45458137 actaataatctggttcggattatgtaatccggaccaagggtattttagtaaattttgcaaggcacgcgaggaggcagcagggtgggaaaagtaatagtc 45458039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 30003443 - 30003375
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccgga 97  Q
    ||||||||||||| |||||||   ||||| || || |||||||||||||||||||||||||||||||||    
T  30003443 cataacatctggtccggatttctgtttccagaaataactaacaatctggtccggattatataatccgga 30003375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 44107939 - 44107840
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||| || | ||||| || ||| | || |||||||| |||||  || ||||||||||||||  |||||| ||||||||||||||    
T  44107939 cactaacaatctggtccggaatacaaaatccagaccagagataattttggaatttttgtagggcacgcgagaaggcaagatggtgaaaaaagtaatagtc 44107840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 4047971 - 4047846
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||||   |||||  || |||||||||||||||||||||| |  | ||||||||||||  ||||||| || |||| |||||||||| || |     
T  4047971 cataacatctggtctagatttcattatccggatatcactaacaatctgatttgaattatataatccaaatcagggatatttttagaaattttgcagggcg 4047872  T
Q  129 cgcgagaaggcagcatggtggaaaaa 154  Q
     || ||||||||||| ||||| ||||    
T  4047871 tgcaagaaggcagcaaggtgggaaaa 4047846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 16023705 - 16023572
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||| ||||||| ||||| ||  || ||||| |||||||||||| | ||||| ||||| ||||||| | |||||||| ||| | ||||||||| ||       
T  16023705 cataagatctggtccggatatttgttaccggaaatcactaacaatattgtccgaattatgtaatccgaaccaggggtattttagtaaattttgcagggtg 16023606  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    |||||||| |||| | | ||||||||||||||||    
T  16023605 cgcgagaacgcagtaggatggaaaaagtaatagt 16023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 31092938 - 31092818
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | |||||   ||||| || || ||||||||| ||||||||| ||| ||||||||| |||||||| ||| | |||||||   |  |     
T  31092938 cataacatctggtccagatttctgtttccagaaataactaacaatttggtccggaatatgtaatccggagcaggggtattttagtaaattttatagagcg 31092839  T
Q  129 cgcgagaaggcagcatggtgg 149  Q
    |||||||||||||||||||||    
T  31092838 cgcgagaaggcagcatggtgg 31092818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 1602618 - 1602490
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||| | || ||||   ||||| || ||||||||||||||||||||||||   ||||||||| ||||| || ||| | ||||||||  || |     
T  1602618 cataacatctgatccgaatttctgtttccagaaatcactaacaatctggtccggatt---taatccggaccagggatattttagtaaattttgtagggcg 1602522  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaata 160  Q
     ||||| |||||||| | ||||||||||||||    
T  1602521 tgcgaggaggcagcaggttggaaaaagtaata 1602490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 47986013 - 47986069
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaatttt 120  Q
    |||||||||||||||||||||||  ||||||||| |||||||| || ||||| ||||    
T  47986013 cactaacaatctggtccggattacgtaatccggaccaggggtatttatggaattttt 47986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 56463947 - 56464015
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccgga 97  Q
    ||||||||||||| |||||||   |||||| | ||||||||||||||| | ||||||||| ||||||||    
T  56463947 cataacatctggtccggatttctgtttccgaaaatcactaacaatctgattcggattatacaatccgga 56464015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 16684578 - 16684677
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||  ||| ||   |||| ||| |||||||| |||||||| ||||||    | || ||||||||| ||||||||||||||||||||||    
T  16684578 cactaacaatctggtatggaatacgaaatctggaccaggggtaattttggaatttttgcatagcgcgtgagaaggcaacatggtggaaaaagtaatagtc 16684677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 40693314 - 40693413
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  ||||||||| ||| |||| || ||||| |||| |  | | | |||||||||| || ||||| |||| ||||||||    
T  40693314 cactaacaatctggtccggattacgtaatccggaccagaggtatttatggaatttttacaaggcgcacgagaaggcaacaaggtgggaaaaataatagtc 40693413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 43842183 - 43842276
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgc 122  Q
    ||||||||||||  |||||||   |||||| | ||||||||||||||| |||||||||| |||||  || || ||||| ||| | |||||||||    
T  43842183 cataacatctgggccggatttctgtttccgaaaatcactaacaatctgatccggattatgtaatctagaccaagggtattttagtaaattttgc 43842276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 38991027 - 38991071
Alignment:
Q  113 gaaattttgcgggacacgcgagaaggcagcatggtggaaaaagta 157  Q
    |||||||||| || | |||||||||||| ||||||||||||||||    
T  38991027 gaaattttgcagggcgcgcgagaaggcaacatggtggaaaaagta 38991071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 41305577 - 41305534
Alignment:
Q  182 gggggtgggtattggctataattttctttaggcccgtcacttttg 226  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||    
T  41305577 gggggtgggtattggctataatttt-tttaggtccgtctcttttg 41305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 20091399 - 20091265
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  ||||||||| |||||||||||||||||||||||||  |||||| || |||||||| ||||||||||||||| || |     
T  20091399 cataacatctggtccggatttaattttccggaaatcactaacaatctggtccggattacgtaatccagaccaggggtatttttggaaattttgcagggcg 20091300  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||||  |||||||||||||    
T  20091299 cgcgagaaggcagcagggtgtgaaaagtaatagtc 20091265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 6347135 - 6346999
Alignment:
Q  27 cgcataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggga 126  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||||| || |||||||||| ||||||||| |||||||| ||| | ||||||||| ||     
T  6347135 cgcataacatctggtccgaatttcgtttttcggatatcactaacaatttgctccggattatgtaatccggaccaggggtattttagtaaattttgcaggg 6347036  T
Q  127 cacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    | ||||||||||||||| ||| |||||||||||||||    
T  6347035 cgcgcgagaaggcagcagggtagaaaaagtaatagtc 6346999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 29544236 - 29544104
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| ||||||| |||| ||||| | ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || |     
T  29544236 cataacatctggtccggatttagttt-ccggaaa-cactaacaatctggtccggattatataattcggaccaggggtatttttggaaattttgcagggcg 29544139  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    | ||||||||||||| ||||| |||||||||||||    
T  29544138 cacgagaaggcagcagggtgggaaaagtaatagtc 29544104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 32337645 - 32337516
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  || |||||||||| ||||||||||| ||| |||||||||||||| | || ||||| ||||||||||||||| || ||    
T  32337645 cataacatctggtccggatttctttgtccggatatcgctaacaatctgctccagattatataatccgaaccaagggtatttttggaaattttgcagggca 32337546  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    | |||||| |||||| ||||| ||||||||    
T  32337545 cacgagaaagcagcagggtgggaaaagtaa 32337516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 13546489 - 13546596
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  ||||||||| |||||||||||||||||| | ||||||||||||| | |||||||| ||||||||||||||| || |     
T  13546489 cataacatctggtccggatttaattttccggaaatcactaacaatctggtctgtattatataatccgaaccaggggtatttttggaaattttgcagggcg 13546588  T
Q  129 cgcgagaa 136  Q
    ||||||||    
T  13546589 cgcgagaa 13546596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 13677984 - 13677877
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  ||||||||| |||||||||||||||||| | ||||||||||||| | |||||||| ||||||||||||||| || |     
T  13677984 cataacatctggtccggatttaattttccggaaatcactaacaatctggtctgtattatataatccgaaccaggggtatttttggaaattttgcagggcg 13677885  T
Q  129 cgcgagaa 136  Q
    ||||||||    
T  13677884 cgcgagaa 13677877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 40105554 - 40105688
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   ||| |||| || ||||||||||||||||| ||||| ||||||||| |||||||| |||   ||||||||| || |     
T  40105554 cataacatctggtccggatttctgtttgcggaaataactaacaatctggtccgaattatgtaatccggaccaggggtattttaataaattttgcagggcg 40105653  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| |||||||| |||||||||||||||||||    
T  40105654 cgcgaggaggcagcagggtggaaaaagtaatagtc 40105688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 43098845 - 43098978
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | |||||  ||||| ||| |||||||||||||||||| ||||||||||||||| | | |||||| ||||||||||||||  ||       
T  43098845 cataacatctggtccagatttaattttc-ggaaatcactaacaatctggtctggattatataatccgaaccgggggtatttttggaaattttgaagggtg 43098943  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||||| |||||||||||||    
T  43098944 cgcgagaaggcagcagggtgggaaaagtaatagtc 43098978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 37098197 - 37098099
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    ||||| ||||||||||||||||||||||||||| || || ||||| ||||||||||||||| || | |||||||||||| || ||||| ||||||||||    
T  37098197 atcacaaacaatctggtccggattatataatccagaccatgggtatttttggaaattttgcagggcgcgcgagaaggcaacagggtgggaaaagtaata 37098099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 32946911 - 32946776
Alignment:
Q  29 cataacatctggttcggattttgtt--ttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggga 126  Q
    ||||||||||||| ||||||||  |  ||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| ||| | ||||||||| |      
T  32946911 cataacatctggtccggatttttctgtttccggaaatcactaacaatctgatccggattatgtaatccgggtcaggggtattttagtaaattttgcagag 32946812  T
Q  127 cacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    | || ||| |||||||| |||||||||||||||||||    
T  32946811 cgcg-gaggaggcagcagggtggaaaaagtaatagtc 32946776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 12060 - 12158
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    |||||||||||||||||||||||  |||||| || |||||||| || ||||| |||||| || | |||||||||||| || ||||| ||||||||||||    
T  12060 cactaacaatctggtccggattacgtaatccagaccaggggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagt 12158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 8240293 - 8240426
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   |||| ||| || |||||||||| |||||||||||| ||||||||| |||   || ||| | ||||||||  || |     
T  8240293 cataacatctggtccggatttctgtttcaggaaataactaacaatccggtccggattatgtaatccggaccagaaatattttagtaaattttgtagggcg 8240392  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    |||||| |||||||| ||||||||||||||||||    
T  8240393 cgcgaggaggcagcagggtggaaaaagtaatagt 8240426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 627211 - 627091
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  || ||  |||||||||||||||||| | ||||||||||||| | || ||   ||| ||||||||||||||| || ||    
T  627211 cataacatctggtccggatttctttgtctagatatcactaacaatctgcttcggattatataattcagaccacaagtatttttggaaattttgcagggca 627112  T
Q  129 cgcgagaaggcagcatggtgg 149  Q
    |||||||| |||||| |||||    
T  627111 cgcgagaatgcagcagggtgg 627091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 39318901 - 39319034
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| ||||||| ||||||| | | || |||||||||||||| | |||||| ||||||||| |||||||| |||   ||||||||| |  |    
T  39318901 cataacatctggtccggatttctgttttc-gaaaataactaacaatctggttcagattatgtaatccggaccaggggtattttaataaattttgcagagc 39318999  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    ||||||||||||| ||  |||| ||||||||||||    
T  39319000 acgcgagaaggcatcagagtgggaaaagtaatagt 39319034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 23144408 - 23144499
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttg 121  Q
    ||||||||||| | ||||||| ||||| || | | |||||||||||||||||||||||||||||||||| || |||||  |||| ||||||||    
T  23144408 cataacatctgatccggatttcgtttttcgaaaa-cactaacaatctggtccggattatataatccggaccaagggtatatttgaaaattttg 23144499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 586711 - 586804
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgc 122  Q
    ||||||||||||| |||||||  || ||  |||||||||||||||||| | ||||||||||||| | || ||  |||| |||||||||||||||    
T  586711 cataacatctggtccggatttctttgtctagatatcactaacaatctgcttcggattatataattcagaccacaggtatttttggaaattttgc 586804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 42132206 - 42132301
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaat 159  Q
    ||||||||||||  |||  ||||  |||| ||||||||||||| || || || |||||| |||| | ||||||||||||| |||||||||||||||    
T  42132206 cactaacaatctaatccaaattacgtaattcggatcaggggtatttatgaaatttttgcaggacgcacgagaaggcagcagggtggaaaaagtaat 42132301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 23421283 - 23421381
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    ||||||||||||||||| |||||  ||||  ||| |||||||| || ||||| |||||  ||  |||||||||||||  |||||| |||||||||||||    
T  23421283 cactaacaatctggtccagattacgtaatttggaccaggggtatttatggaatttttgtaggggacgcgagaaggcaatatggtgaaaaaagtaatagt 23421381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 39260598 - 39260655
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattat 87  Q
    ||||||||||||| |||||||   |||||||| | ||||||||||||||||||||||||    
T  39260598 cataacatctggtccggatttctgtttccggaaa-cactaacaatctggtccggattat 39260655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 13278525 - 13278394
Alignment:
Q  31 taacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacg 130  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| |||| ||||| ||||||| | || | ||    
T  13278525 taacatctggtccggatttcgtttttcggatatcactaacaatctagtccgaattatataatccggaccagaggtatttttgtaaattttacagggcgcg 13278426  T
Q  131 cgagaaggcagcatggtggaaaaagtaatagt 162  Q
    ||||||| ||||| ||||||||||||||||||    
T  13278425 cgagaagacagcagggtggaaaaagtaatagt 13278394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 18137394 - 18137299
Alignment:
Q  63 tcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||  | | ||||||||||||||| ||||| ||||||||    
T  18137394 tcactaacaatcttgtccggattatataatccgaaccaggggtatttttggaaattttgcaaggcgcgcgagaaggcagcagggtgggaaaagtaa 18137299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 45116916 - 45116783
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||| || |||||||    ||||||| ||||||||||||||||| |||||||| ||||||||| || || || ||| | ||||||||| || |     
T  45116916 cataacatctagtccggatttctgcttccggaaatcactaacaatctggttcggattatgtaatccggacca-ggttattttagtaaattttgcagggcg 45116818  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||| ||||||||||| |||||||||||||    
T  45116817 cgcgagaagacagcatggtgggaaaagtaatagtc 45116783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 7943056 - 7943169
Alignment:
Q  43 cggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagc 142  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||| ||| | ||| |||||||| ||| | ||||||||| ||   ||||||||||||||    
T  7943056 cggatttcgttttccggaaatcactaacaatctagtccggattatgtaaacaggaccaggggtattttagtaaattttgcagg--gcgcgagaaggcagc 7943153  T
Q  143 atggtggaaaaagtaa 158  Q
    | ||||| ||||||||    
T  7943154 acggtgggaaaagtaa 7943169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 38707544 - 38707654
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||| || ||||| ||| | ||||||| | ||   |||||||||||||||  |||| ||    
T  38707544 tttccggaaatcactaacaatctgatccggattatgtaatccggaccatgggtattttagtaaatttttcagggtgcgcgagaaggcagcagagtgggaa 38707643  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  38707644 aagtaatagtc 38707654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 17304721 - 17304589
Alignment:
Q  31 taacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacac 129  Q
    ||||||||||| ||||||| ||||||| ||| ||||||||||||||||| |  ||||| |||||| || ||||| || |||    |||||||| || | |    
T  17304721 taacatctggtccggatttctgttttc-ggaaatcactaacaatctggttcaaattatgtaatccagaccagggttattttaattaattttgcagggcgc 17304623  T
Q  130 gcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||| |||||||||| ||||||||    
T  17304622 gcgagaaggcagcagggtggaaaaaataatagtc 17304589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 43333618 - 43333528
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaa 154  Q
    |||||||||||||| ||||||||  ||||||||| |||| ||| || ||||| |||||| |||| |||||||||||| || ||||| ||||    
T  43333618 cactaacaatctggcccggattacgtaatccggaccaggagtatttatggaatttttgcaggacgcgcgagaaggcaacaaggtgggaaaa 43333528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 31994377 - 31994505
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |  |||| |||||| ||| | || |||||||||||||||||||||||||||| || | | |||| ||| |  ||| |||| || |     
T  31994377 cataacatctggtccatatttcgttttctggaaagca-taacaatctggtccggattatataatccagacctgaggtattttagtgaatattgcagggcg 31994475  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||||||| ||| ||||||||||    
T  31994476 cgcgagaaggcagcagggtagaaaaagtaa 31994505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 5464715 - 5464814
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||| |||||| ||||| |||||||||| |||||||| || || || |||||| |  | ||||||||||||  | ||||| |||||||||||||    
T  5464715 cactaacaatttggtccagattacataatccggaccaggggtatttatgaaatttttgcagagcgcgcgagaaggcaataaggtgggaaaagtaatagtc 5464814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 34906160 - 34906046
Alignment:
Q  43 cggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagc 142  Q
    |||||||| ||||||||| | ||||||||||||||| ||||  |  ||||||||| |||| ||| |||||||  |||||| || |||||||||||||||     
T  34906160 cggattttattttccggaaa-cactaacaatctggttcggaaaaggtaatccggaccaggagtatttttggattttttgcagggcacgcgagaaggcagt 34906062  T
Q  143 atggtggaaaaagtaa 158  Q
     || ||| ||||||||    
T  34906061 ttgatgggaaaagtaa 34906046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 38207316 - 38207251
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatcc 94  Q
    ||||||||||||| |||||||   |||||| | ||||||||||||||| |||||||||| ||||||    
T  38207316 cataacatctggtccggatttctgtttccgaaaatcactaacaatctgatccggattatgtaatcc 38207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 12287039 - 12287135
Alignment:
Q  67 taacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||| | ||||| |||||||||| ||||| || ||||||  ||||||| || ||||||||||    ||| ||||| |||||||||||||    
T  12287039 taacaatctggttcagattacataatccggaccagggatatttttggttattttgcagggcacgcgagaaacaggcagggtgggaaaagtaatagtc 12287135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 9634972 - 9634936
Alignment:
Q  127 cacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||  |||||||||||||||||||    
T  9634972 cacgcgagaaggcagcggggtggaaaaagtaatagtc 9634936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 9305263 - 9305397
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||| | || ||||  |||||||| |||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| | || |     
T  9305263 cataacatctgatccgtatttaattttccggttatcactaacaatctggtccagattatataatccgaaccaggggtatttttggaaattttacagggcg 9305362  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     ||||||||| ||||||||||||||| ||||||||    
T  9305363 tgcgagaaggtagcatggtggaaaaaataatagtc 9305397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 31318328 - 31318227
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatag 161  Q
    |||||||||||||||||||||||||  ||||||||| || ||||| ||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||    
T  31318328 atcactaacaatctggtccggattacgtaatccggaccatgggtattttcggaaattttgcagggcacgcgagaaggcagcatggtgggaaaagaaatag 31318229  T
Q  162 tc 163  Q
    ||    
T  31318228 tc 31318227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 31271181 - 31271051
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| | ||||| || ||| | ||||||||| || |    
T  31271181 cataacatctggtccggatttctgttttc-ggaaatcactaacaatctggtccggattatgtaatccgaaccagggttattttagtaaattttgcagggc 31271083  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaata 160  Q
     ||||||||||||||| ||||| ||||||||||    
T  31271082 gcgcgagaaggcagca-ggtgggaaaagtaata 31271051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 303551 - 303452
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||| | ||||||||| |||  |||||| || ||||| ||||| |||||||||||||    
T  303551 cactaacaatctggtccggattacataatccggaccaggggtattttagtaaattttgcaggatgcgcgaggagacagcagggtgggaaaagtaatagtc 303452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 34949333 - 34949237
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    ||||||||||||||| |||||||  ||||||||| |||||||| || ||||| |||||| || |||||||||||||| || ||||| ||||||||||    
T  34949333 cactaacaatctggttcggattacgtaatccggaccaggggtatttatggaacttttgcagggcacgcgagaaggcaacagggtgggaaaagtaata 34949237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 31723198 - 31723308
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||| | |||||| |||||||| |||||||||| ||||||| | |||||||| ||| | ||||||||  |||   ||||||||| |||||||||||||    
T  31723198 tttccgaaaatcactgacaatctgatccggattatgtaatccgaaccaggggtattttagtaaattttgtaggatgggcgagaagggagcatggtggaaa 31723297  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  31723298 aagtaatagtc 31723308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 480119 - 480021
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| ||| ||||||||||||| |||||||||  ||||||| || ||||| |||||| || | |||||||||||| |||||||| |||| ||||||||    
T  480119 cactaataatatggtccggattatgtaatccggactaggggtatttatggaatttttgcagg-cgcgcgagaaggcaacatggtgggaaaaataatagtc 480021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 29435899 - 29435803
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    ||||||||||||||||| |||||  |||||||||||||||||| || || || |||||| |  | |||||||||||| || ||||  ||||||||||    
T  29435899 cactaacaatctggtccagattacgtaatccggatcaggggtatttatgaaatttttgcagagcgcgcgagaaggcaacagggtgagaaaagtaata 29435803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 438777 - 438743
Alignment:
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||||||| |||||||||||||    
T  438777 cgcgagaaggcagcatggtgggaaaagtaatagtc 438743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 49851546 - 49851417
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || ||||  ||||||||||||||||||||||||| |||| |||||||||| |||| ||| |||| ||||||||||||||  || |     
T  49851546 cataacatctggtccgaatttctttttccggatatcactaacaatctgatccgaattatataattcggaccagcggtatttttggaaattttgaagggcg 49851447  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||||||| ||||| ||||||||    
T  49851446 cgcgagaaggcagcagggtgggaaaagtaa 49851417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 41900587 - 41900720
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  ||| ||||| |||| |||||| || ||||| ||||||||||||||||||||| || ||||||||||||||| ||||     
T  41900587 cataacatctggtccggatttaattt-ccggaaatcattaacaaccttgtccgaattatataatccggatcagggatatttttggaaattttgcaggact 41900685  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||| |||  ||| ||||||||||||||    
T  41900686 cgcgagaaggctgcaaagtgtaaaaagtaatagtc 41900720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 14587649 - 14587783
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   |||||||| ||||||||||||||| |||||||||| ||||||||| || ||||| ||| | ||||||||| ||       
T  14587649 cataacatctggtccggatttctgtttccggaaatcactaacaatctgatccggattatgtaatccggaccatgggtattttagtaaattttgcagggtg 14587748  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    || |||||||||||| ||||| |||||||||||||    
T  14587749 cgtgagaaggcagcagggtgggaaaagtaatagtc 14587783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 3475599 - 3475698
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  |||||||||||||||||| || ||||| |||||  || |||||||||||||| || |||| ||||||||||||||    
T  3475599 cactaacaatctggtccggattacgtaatccggatcaggggtatttatggaatttttgtagggcacgcgagaaggcaacagggtgaaaaaagtaatagtc 3475698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 44496318 - 44496187
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||||  ||||||   |||||||| ||||||||||||||||||||||||| ||||| |||| ||||| || |||   ||||||||| || |     
T  44496318 cataacatctggtctggatttctgtttccggaaatcactaacaatctggtccggattacataattcggaccagggttattttaataaattttgcagggcg 44496219  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaata 160  Q
    |||||||||||||||| |||| ||||||||||    
T  44496218 cgcgagaaggcagcatagtgggaaaagtaata 44496187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 3517881 - 3518015
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || ||||   |||||||| ||||||||||||||| |||||||||| | ||||||| |||| ||| ||| | ||||||||| ||       
T  3517881 cataacatctggtccgaatttctgtttccggaaatcactaacaatctgatccggattatgtgatccggaccaggagtattttagtaaattttgcagggtg 3517980  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||||| |||||||||||||    
T  3517981 cgcgagaaggcagcagggtgggaaaagtaatagtc 3518015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 38860514 - 38860422
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgc 122  Q
    ||||||||||||| ||||||| |||||||||| | ||||||||||| |||||||||||||||||||| |  ||||||| |||||||||||||||    
T  38860514 cataacatctggtccggatttcgttttccggaaa-cactaacaatcgggtccggattatataatccgaacaaggggtatttttggaaattttgc 38860422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 50262227 - 50262355
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| ||||||| ||||| |||| | ||||||||||| | |||| |||||||||||| ||  ||||||| ||||||||||||||| || |     
T  50262227 cataacatctggtccggatttcgtttttcggaaa-cactaacaatcggatccgaattatataatccagactaggggtatttttggaaattttgcagggcg 50262325  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    || |||||||||  ||||||||||||||||    
T  50262326 cgtgagaaggcaatatggtggaaaaagtaa 50262355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 52632654 - 52632750
Alignment:
Q  26 gcgcataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgc 122  Q
    |||||||| ||||||| || ||||  ||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||    
T  52632654 gcgcataatatctggtccgaatttaattttccggaaatcactaacaatctgatccggattatataatctggaccaggggtatttttgaaaattttgc 52632750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 29961229 - 29961095
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | |||||   |||||||| |||||||||||||||||||||||||| |||||||||  ||||||| ||| | |||||| ||  |       
T  29961229 cataacatctggtccagatttctgtttccggaaatcactaacaatctggtccggattatgtaatccggactaggggtattttagtaaatttcgcatggtg 29961130  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||||| |||| ||||||||    
T  29961129 cgcgagaaggcagcagggtgggaaaaataatagtc 29961095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 42882895 - 42883029
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || ||||   |||||| | || |||||||||||||||| |||||| | ||||| | |||||||| ||| | ||||||||| ||||     
T  42882895 cataacatctggtccgaatttctgtttccgaaaataactaacaatctggtccagattatgtgatccgaaacaggggtattttagtaaattttgcaggacg 42882994  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| |||||||| ||||| |||||||||||||    
T  42882995 cgcgaggaggcagcaaggtgggaaaagtaatagtc 42883029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 48965197 - 48965327
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||| ||||||| |||||||   ||||| || |||||||||||||||||||||||||| ||||||| ||||| |||| ||| | ||||||| | || |     
T  48965197 cataatatctggtccggatttctgtttccagaaatcactaacaatctggtccggattatgtaatccgaatcagtggtattttagtaaattttacagggcg 48965296  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaat 159  Q
    ||| ||||||||||| |||| ||||||||||    
T  48965297 cgcaagaaggcagcagggtgaaaaaagtaat 48965327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 5750127 - 5750226
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  ||||||||| |||||||| |||||||| |||||| || | | |||||||||  || ||||| |||||||||||||    
T  5750127 cactaacaatctggtccggattacgtaatccggaccaggggtatttttggaatttttgcagggcgcccgagaaggctacagggtgggaaaagtaatagtc 5750226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 23984336 - 23984410
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggg 103  Q
    ||||||||||||| ||||| | ||||||| || |||||||||||||||||| ||||||||||||| |||||||||    
T  23984336 cataacatctggtccggatatcgttttcctgacatcactaacaatctggtctggattatataatctggatcaggg 23984410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 11952721 - 11952849
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  ||||||| | |||||||||||||| |||||||||||   ||||||| || || || ||||||||||||||| || |     
T  11952721 cataacatctggtccggatttaattttccgcaaatcactaacaatcttgtccggattat---atccggaccatggatatttttggaaattttgcagggcg 11952817  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
     || |||||||||   ||||| |||||||||||||    
T  11952818 agctagaaggcag---ggtgggaaaagtaatagtc 11952849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 12700849 - 12700983
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   |||||||| ||||||||||||||   || |||||| ||||||| | ||| | || ||| | ||||||||| || ||    
T  12700849 cataacatctggtccggatttctgtttccggaaatcactaacaatctaacccagattatgtaatccgaaccagagatattttagtaaattttgcagggca 12700948  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| ||||||||   |||||||||||||||||    
T  12700949 cgcgaggaggcagcagaatggaaaaagtaatagtc 12700983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 41086241 - 41086187
Alignment:
Q  26 gcgcataacatctggttcggattttgttttccggatatcactaacaatctggtcc 80  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  41086241 gcgcataacatctggtccgaatttcgttttccggatatcactaacaatctggtcc 41086187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 41091009 - 41090955
Alignment:
Q  26 gcgcataacatctggttcggattttgttttccggatatcactaacaatctggtcc 80  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  41091009 gcgcataacatctggtccgaatttcgttttccggatatcactaacaatctggtcc 41090955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 44757837 - 44757969
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||  |||||||   |||||||| | ||||||||||||||| |||||||  ||||| | |  ||||||| || || || |||||| || |     
T  44757837 cataacatctggcccggatttctgtttccggaaa-cactaacaatctggttcggattacgtaatctgaactaggggtatttatgaaatttttgcagggcg 44757935  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    ||||||||||||||||||||| ||||||||||||    
T  44757936 cgcgagaaggcagcatggtgggaaaagtaatagt 44757969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 18272070 - 18271971
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||||||||| ||||||  || || ||||| || ||||| |||||| || | |||||||||||| || ||||| ||||| |||||||    
T  18272070 cactaacaatctggtccggattacataatctagaccaagggtatttatggaatttttgctgggcgcgcgagaaggcaacagggtgggaaaagcaatagtc 18271971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 18276724 - 18276625
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||||||||| ||||||  || || ||||| || ||||| |||||| || | |||||||||||| || ||||| ||||| |||||||    
T  18276724 cactaacaatctggtccggattacataatctagaccaagggtatttatggaatttttgctgggcgcgcgagaaggcaacagggtgggaaaagcaatagtc 18276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 22335235 - 22335334
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  ||||||||| |||||||| || | ||| |||||| || | ||||||||||||  | ||||| ||||||| |||||    
T  22335235 cactaacaatctggtccggattacgtaatccggaccaggggtatttatagaatttttgcagggcgcgcgagaaggcaatagggtgggaaaagtagtagtc 22335334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 12528267 - 12528174
Alignment:
Q  45 gattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggc 139  Q
    ||||| |||||| ||| ||||||||||||||| ||||| |||| |||||||||  ||||||| ||||| ||||||||| || | |||||||||||    
T  12528267 gatttcgttttctgga-atcactaacaatctgatccgggttatgtaatccggacgaggggtatttttgaaaattttgcagggcgcgcgagaaggc 12528174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 12525239 - 12525337
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||| ||||||||||||  ||||||||| |||||||| || ||||| ||||  ||||  |||||||||||| ||  |||| |||||||||||||    
T  12525239 cactaacaatttggtccggattacgtaatccggaccaggggtatttatggaatttttcaggga-gcgcgagaaggcaacaatgtgggaaaagtaatagtc 12525337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 29947018 - 29947112
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaat 159  Q
    |||||||||||||||||||||||  |||||| || || ||||| || ||||| |||||| || | |||||||||||| || ||||| |||||||||    
T  29947018 cactaacaatctggtccggattacgtaatcc-gaccatgggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaat 29947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 39598014 - 39597916
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  |||||||| ||||||||| || ||| |||||||  || | || ||||||||| || ||||| |||||| ||||||    
T  39598014 cactaacaatctggtccggattacgtaatccggctcaggggtatttatgg-aattttgtagggcgcgtgagaaggcaacagggtgggaaaagtgatagtc 39597916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 22858590 - 22858456
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||||||||||||   |||| | |  |||||||||||||| ||| |||||| ||||||||| ||| |||| ||| | ||||||||  ||       
T  22858590 cataacatctggttcggatttatgtttctgaaagtcactaacaatctgttccagattatgtaatccggaccagaggtattttagtaaattttgtagggtg 22858491  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| |||||||| | ||  |||||||||||||    
T  22858490 cgcgaggaggcagcaagatgagaaaagtaatagtc 22858456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 33801170 - 33801060
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||  | ||||| ||| |  ||  |  | |||| ||||||||||||| | ||||| ||    
T  33801170 tttccggaaatcactaacaatctgatccggattatacaatccggacaaagggtattttggtcaaaatcacaggacgcgcgagaaggcagtagggtgggaa 33801071  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  33801070 aagtaatagtc 33801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 7564897 - 7565011
Alignment:
Q  43 cggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagc 142  Q
    |||||||| |||||| || | ||||||||||||||||||||  |  ||||||||| || || || |||||||| ||||||    | ||||||||||||||    
T  7564897 cggattttattttccagaaa-cactaacaatctggtccggaaaacgtaatccggaccaaggatatttttggaatttttgcaaagcgcgcgagaaggcagc 7564995  T
Q  143 atggtggaaaaagtaa 158  Q
    | ||||| ||||||||    
T  7564996 agggtgggaaaagtaa 7565011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 14270254 - 14270196
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgc 122  Q
    |||||||||||||||||||||||  ||||||||| ||| |||| || ||||| ||||||    
T  14270254 cactaacaatctggtccggattacgtaatccggaccagaggtatttatggaatttttgc 14270196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 46597439 - 46597551
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||| ||||||||| |||||| |||| ||||||||||| ||| ||| |||||| ||||||| |||| ||||| |||   ||||||||| ||      
T  46597439 cataacatctgattcggatttatgtttt-cggaaatcactaacaacctgatcc-gattatgtaatccgaatcaagggtattttaataaattttgcagggt 46597536  T
Q  128 acgcgagaaggcagc 142  Q
     ||||||||||||||    
T  46597537 gcgcgagaaggcagc 46597551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41723328 - 41723284
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggta 106  Q
    ||||||||||||||| ||||||||||| ||||||||  |||||||    
T  41723328 atcactaacaatctgatccggattatacaatccggacaaggggta 41723284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 14816984 - 14817082
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||| ||||||||||||| | |||| |||||||||||    
T  14816984 atcactaataatctggtccggattatataatccagatcgggggtatttttggaaattttgcaggacgcgcgagaaggcagtagggtgaaaaaagtaata 14817082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 15263980 - 15264078
Alignment:
Q  62 atcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaata 160  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||| ||||||||||||| | |||| |||||||||||    
T  15263980 atcactaataatctggtccggattatataatccagatcgggggtatttttggaaattttgcaggacgcgcgagaaggcagtagggtgaaaaaagtaata 15264078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 46254698 - 46254564
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | |||||   |||||||| ||||||||||||||| |||||||||| ||||||||| |||||||| ||| | ||||||||| || |     
T  46254698 cataacatctggtccagatttctgtttccggaaatcactaacaatctgatccggattatgtaatccggaccaggggtattttagtaaattttgcagggcg 46254599  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||| |||||||| ||||| |||||||||||||    
T  46254598 cgcgaggaggcagcagggtgggaaaagtaatagtc 46254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 38257766 - 38257865
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||| ||||  ||||||||| |||||||| || ||||| |||||| || |||||||||||| | || |||||||||||||||||||    
T  38257766 cactaacaatctggtccgaattacgtaatccggaccaggggtatttatggaatttttgcagggcacgcgagaaggaaacagggtggaaaaagtaatagtc 38257865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 43458019 - 43457885
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||| || |||| || |||| || ||||| | ||||||||||||||||| |||| ||||||||||||| |||| ||| ||||| ||||||||| || |     
T  43458019 cataatatttggtccgaatttcgtattccgaaaatcactaacaatctggttcggaatatataatccggaccaggagtatttttgaaaattttgcagggcg 43457920  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    || |||||||||||| ||||  |||||||||||||    
T  43457919 cgtgagaaggcagcaaggtgtgaaaagtaatagtc 43457885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 35794309 - 35794180
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||| || ||||||||  ||||| || ||||||||||||||||| |||||||| ||||||| | ||||| || ||| | ||||||||| || |     
T  35794309 cataacatctagtccggatttttgtttccagaaatcactaacaatctggttcggattatgtaatccgaaccagggttattttagtaaattttgcaggtcg 35794210  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
     |||||||||||| | ||||| ||||||||    
T  35794209 tgcgagaaggcagtagggtgggaaaagtaa 35794180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 35585394 - 35585493
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||| |||||| |||||||||| |||||||  || ||||| |||||| || |||||||||||||  || ||||| |||| ||||||||    
T  35585394 cactaacaatctggtctggattacataatccggaccaggggtgtttatggaatttttgcagggcacgcgagaaggctacagggtgggaaaaataatagtc 35585493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 43270058 - 43269960
Alignment:
Q  65 actaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||| |||||||||| ||||||||||||||| || |||   ||||||||| || | |||||||||||   |||||||||||| ||||||||    
T  43270058 actaacaatctgatccggattatgtaatccggatcagggatactttaataaattttgcagggcgcgcgagaaggctttatggtggaaaaaataatagtc 43269960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 15032875 - 15032974
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||||||||||  ||||||||| |||||||| || || || |||||| || | | |||||||||| || |||| |||| |||||||||    
T  15032875 cactaacaatctggtccggattacgtaatccggaccaggggtatttatgaaatttttgcagggcgcacgagaaggcaacagggtgaaaaaggtaatagtc 15032974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 26791797 - 26791698
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||| ||||||  ||||||  | |||||||| || ||||| |||||| |||| |||||||||||| || ||||| |||| ||||||||    
T  26791797 cactaacaatctggtctggattacgtaatccaaaccaggggtatttatggaatttttgcaggacgcgcgagaaggcaacagggtgggaaaaataatagtc 26791698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 34848187 - 34848314
Alignment:
Q  36 tctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgaga 135  Q
    |||||| |||||||   |||||||| ||||||||||||||| |||| || || ||||||||| ||||| || |||   ||||||||  |||  |||||||    
T  34848187 tctggtccggatttctgtttccggaaatcactaacaatctgatccgaataatgtaatccggaccagggatattttaataaattttgtaggatgcgcgaga 34848286  T
Q  136 aggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||| ||||| |||| ||||||||    
T  34848287 aggcagcagggtgggaaaaataatagtc 34848314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 37998471 - 37998368
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcag----catggtggaaaaagtaat 159  Q
    |||||||||||| ||||||||||| |||||| || |||||||| |||| ||| |||||| || |||| ||||||||||    |||| ||| |||||||||    
T  37998471 cactaacaatctagtccggattatgtaatccagaccaggggtatttttagaatttttgcagggcacgtgagaaggcaggcaacatgatgggaaaagtaat 37998372  T
Q  160 agtc 163  Q
    ||||    
T  37998371 agtc 37998368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 25529409 - 25529474
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatcc 94  Q
    ||||| ||||||| ||||||| || ||||||| |||||||||||||||||||||  ||||||||||    
T  25529409 cataatatctggtccggatttcgtattccggaaatcactaacaatctggtccgggatatataatcc 25529474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 7255733 - 7255832
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||| ||||||||||||  ||||||| | |||||||| || ||||| |||||| |  | |||||||||||| ||  |||| |||||||||||||    
T  7255733 cactaacaatttggtccggattacgtaatccgaaccaggggtatttatggaatttttgcagagcgcgcgagaaggcaacaaagtgggaaaagtaatagtc 7255832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42321432 - 42321479
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctg 76  Q
    |||||||||| ||  | |||||||||||||||||||||||||||||||    
T  42321432 cataacatcttgtctgaattttgttttccggatatcactaacaatctg 42321479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 33950738 - 33950694
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccgga 97  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||||    
T  33950738 tttccggaaatcactaacaatccgatccggattatacaatccgga 33950694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 32529637 - 32529503
Alignment:
Q  30 ataacatctggttcggattttgttttccggatatcact-aacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    |||||||||||| || ||||   |||||||| |||||| |||||||||||||| ||||| ||||||||| |||||||| ||| | ||||||| | || ||    
T  32529637 ataacatctggtccgaatttctgtttccggaaatcacttaacaatctggtccgaattatgtaatccggaccaggggtattttagtaaattttacagggca 32529538  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| |||||||||||||||||||    
T  32529537 cgcgagaaggcagcagggtggaaaaagtaatagtc 32529503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 41194022 - 41194151
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||   || ||| | ||||||||| || |     
T  41194022 cataacatctggtcctgatttcgttttccggaaatcactaacaatctggtccggattatgtaatccggaccagaaatattttagtaaattttgccgggcg 41194121  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    ||||||||||||||| ||||| ||||||||    
T  41194122 cgcgagaaggcagcagggtgggaaaagtaa 41194151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 31765512 - 31765634
Alignment:
Q  38 tggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaag 137  Q
    |||| |||||||  |||||| || |||||||||||| ||||||| ||||||||||||||| ||||| || ||||| ||||||||| || | |||||||||    
T  31765512 tggtccggatttcattttccagaaatcactaacaatttggtccgaattatataatccggaccagggatatttttgaaaattttgcagggcgcgcgagaag 31765611  T
Q  138 gcagcatggtggaaaaagtaata 160  Q
    |||||| | ||||||||||||||    
T  31765612 gcagcaagatggaaaaagtaata 31765634  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 53814783 - 53814649
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| || ||||   |||||||| |||||||||||||||||| | ||||| ||| ||||| ||||| || ||| | ||||||||| ||||     
T  53814783 cataacatctggtccgcatttctgtttccggaaatcactaacaatctggtctgaattatgtaacccggaccagggttattttagtaaattttgcaggacg 53814684  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| ||||| |||||||||||||    
T  53814683 cgcgagaaggcagcagggtgggaaaagtaatagtc 53814649  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 39353137 - 39353017
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||  |||| || | |||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||| | || |     
T  39353137 cataacatctggtccggatttaatttttcgaaaatcactaacaatcttgtccggattatataatccggaccaggggtatttttgaaaattttacagggcg 39353038  T
Q  129 cgcgagaaggcagcatggtgg 149  Q
    ||||| ||||||||| |||||    
T  39353037 cgcgataaggcagcagggtgg 39353017  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 149159 - 149025
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| |||||||   |||| ||| | |||||||||| |||||||||||| ||||||| || || || || ||| | ||||||| | ||||     
T  149159 cataacatctggtccggatttctgtttctggaaaccactaacaatttggtccggattacataatccagaccatggttattttagtaaatttttcaggacg 149060  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| |||||||||||||||||||    
T  149059 cgcgagaaggcagcagggtggaaaaagtaatagtc 149025  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 36403011 - 36403119
Alignment:
Q  55 tccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaa 154  Q
    |||||| |||||||||||| || |||||||||||||||||| |||||||||| ||| | ||||||||| || | |||||| |||||||| ||||  ||||    
T  36403011 tccggaaatcactaacaatttgatccggattatataatccgaatcaggggtattttagtaaattttgcagggcgcgcgaggaggcagcagggtgagaaaa 36403110  T
Q  155 gtaatagtc 163  Q
    |||||||||    
T  36403111 gtaatagtc 36403119  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 39586405 - 39586272
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||| ||  ||||||| ||||||||||||||| || ||| | ||||||||| || |    
T  39586405 cataacatctggtccggatttctgttttc-ggaaatcactaacaatcttgtatggattatgtaatccggatcagggttattttagaaaattttgcagggc 39586307  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
     ||||||||||||  | ||||| ||||||||||||    
T  39586306 gcgcgagaaggcaatagggtgggaaaagtaatagt 39586272  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 49440592 - 49440699
Alignment:
Q  54 ttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaa 153  Q
    ||||||||| |||||||||||||||||||||||  ||||||||| ||| |||| || || || |||||| || | |||||||||||| || |||||||||    
T  49440592 ttccggata-cactaacaatctggtccggattacgtaatccggaccagaggtatttatgaaatttttgcagggcgcgcgagaaggcaacagggtggaaaa 49440690  T
Q  154 agtaatagt 162  Q
    |||||||||    
T  49440691 agtaatagt 49440699  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 10509551 - 10509661
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||| | ||||||||||||||  |||||||||| ||||||||| |||| ||| ||| | |||||||||  |   ||||||||||||||| ||||||||    
T  10509551 tttccgaaaatcactaacaatctaatccggattatgtaatccggaccaggagtattttagtaaattttgcaaggggcgcgagaaggcagcagggtggaaa 10509650  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  10509651 aagtaatagtc 10509661  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 6936308 - 6936211
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatc-actaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcggg 125  Q
    ||||||||||||| || ||||||||||| ||| |   |||||||||| ||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  6936308 cataacatctggtccgaattttgttttctggaaacatactaacaatcgggtccggattatataatcaagaccaggggtatttttggaaattttgcggg 6936211  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 49166409 - 49166538
Alignment:
Q  29 cataacatctggttcggattttgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggaca 128  Q
    ||||||||||||| ||||||| ||||||   | ||||||||||||||||||| |||||| ||||||||| || || || ||| | |||||||||  | |     
T  49166409 cataacatctggtccggatttcgttttctaaaaatcactaacaatctggtccagattatgtaatccggaccatggatattttagtaaattttgcaaggcg 49166508  T
Q  129 cgcgagaaggcagcatggtggaaaaagtaa 158  Q
    |||||||||||| ||| |||| ||||||||    
T  49166509 cgcgagaaggcaacatagtgggaaaagtaa 49166538  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 227461 - 227329
Alignment:
Q  29 cataacatctggttcggattt-tgttttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggac 127  Q
    ||||||||||||| ||||||| ||||||| | | ||||||||||||   ||||||||||| ||||||||| |||| ||| ||| | |||||||||  | |    
T  227461 cataacatctggtccggatttctgttttc-gcaaatcactaacaata--gtccggattatgtaatccggaccaggagtattttagtaaattttgcaaggc 227365  T
Q  128 acgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||| |||||||||||||| |||||||| ||||    
T  227364 acgcgaggaggcagcatggtgggaaaagtaaaagtc 227329  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 44207920 - 44208019
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||||  ||||| |||||||| | ||| |||| || ||||| |||||| || | |||||||||||| || ||||| |||||||||||||    
T  44207920 cactaacaatctggtcaagattacataatccgaaccagaggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagtc 44208019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 47646741 - 47646650
Alignment:
Q  72 atctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||||||||||| |||||||||  ||||||| ||| | |||||||||  |   | ||||||||||||||||||| |||||||||||||    
T  47646741 atctggtccggattatgtaatccggaataggggtattttagtaaattttgcacggtgcacgagaaggcagcatggtgggaaaagtaatagtc 47646650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 40937025 - 40936915
Alignment:
Q  53 tttccggatatcactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaa 152  Q
    |||||||||||||||||||||||||| ||||||| |||||| | | ||||| || |||   ||||||| | ||   ||||||||||||| | ||||| ||    
T  40937025 tttccggatatcactaacaatctggttcggattacataatctgaaccagggttattttaataaattttacagggtgcgcgagaaggcagtagggtgggaa 40936926  T
Q  153 aagtaatagtc 163  Q
    |||||||||||    
T  40936925 aagtaatagtc 40936915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 9126832 - 9126733
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| |||| ||  ||||||||| || ||||| |||||||| |||||| || | |||||| ||||| ||||||   |||||||||||||    
T  9126832 cactaacaatctggttcggaatacgtaatccggaccaagggtatttttggaatttttgcagggcgcgcgagtaggcaacatggttagaaaagtaatagtc 9126733  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 9134939 - 9134840
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    ||||||||||||||| |||| ||  ||||||||| || ||||| |||||||| |||||| || | |||||| ||||| ||||||   |||||||||||||    
T  9134939 cactaacaatctggttcggaatacgtaatccggaccaagggtatttttggaatttttgcagggcgcgcgagtaggcaacatggttagaaaagtaatagtc 9134840  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 33186606 - 33186507
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||| |||||||||| |||||||  |||||| |||||||| || || | ||| |||||| || | |||||||||||| || |||||||||| ||||||||    
T  33186606 cactgacaatctggttcggattacgtaatccagatcagggatatttatagaatttttgcagggcgcgcgagaaggcaacagggtggaaaaaataatagtc 33186507  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 47375059 - 47375158
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||| ||||||||||||||||||  |||| |||| |||| ||| || || || |||||  || | |||||||||||| || ||||| |||||||||||||    
T  47375059 cacttacaatctggtccggattacgtaattcggaccaggtgtatttatgaaatttttgaagggcgcgcgagaaggcatcagggtgggaaaagtaatagtc 47375158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 21450494 - 21450592
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagt 162  Q
    |||||||||||||||  ||||||  ||||||||| |||   || || ||||| ||||||  | | |||||||||||| || ||||||||||||||||||    
T  21450494 cactaacaatctggtatggattacgtaatccggaccagatatatttatggaatttttgcaaggcgcgcgagaaggcaacagggtggaaaaagtaatagt 21450592  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 9116946 - 9116890
Alignment:
Q  64 cactaacaatctggtccggattatataatccggatcaggggtagttttggaaatttt 120  Q
    ||||||||||||||| |||| ||  ||||||||| |||||||| |||||||| ||||    
T  9116946 cactaacaatctggttcggaatacgtaatccggaccaggggtatttttggaattttt 9116890  T

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Target: scaffold1301 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 1495 - 1449
Alignment:
Q  27 cgcataacatctggttcggattttgttttccggatatcactaacaat 73  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||    
T  1495 cgcataacatatggtccggatttcgttttccggatatcactaacaat 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 11974 - 11901
Alignment:
Q  90 aatccggatcaggggtagttttggaaattttgcgggacacgcgagaaggcagcatggtggaaaaagtaatagtc 163  Q
    |||||||| |||||||| |||||||| |||||| || | |||||||||||| || ||||   ||||||||||||    
T  11974 aatccggaccaggggtaattttggaatttttgcagggcgcgcgagaaggcatcaaggtgaggaaagtaatagtc 11901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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